View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19328_high_10 (Length: 346)
Name: NF19328_high_10
Description: NF19328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19328_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 102 - 336
Target Start/End: Original strand, 31384857 - 31385091
Alignment:
| Q |
102 |
attcaaaacaatatttcttatacaaccattaaaaatatttaaaattgtcaggaatgatgcattaaacatatatatgaaaaccagttaccttatatgcgtc |
201 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31384857 |
attcaaaacaatattttttgtacaaccattaaaaatatttaaaattgtcaggaatgatgcattaaacatatatatgaaaaccagttaccttatatgcgtc |
31384956 |
T |
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| Q |
202 |
tgcaacaataagatcaccatttccatcaaaagccaaaccaagtggtcttccacctgtgttaacccaatcttcaaccaccgattcattcaccgttattctc |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31384957 |
tgcaacaataagatcaccatttccatcaaaagccaaaccaagtggtcttccacctgtgttaacccaatcttcaaccaccgattcattcaccgttattctc |
31385056 |
T |
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| Q |
302 |
tttatccacccatcttcacaaccagtataatctac |
336 |
Q |
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|||||||||||||||||||||||||||||| |||| |
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| T |
31385057 |
tttatccacccatcttcacaaccagtataaactac |
31385091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 166 - 316
Target Start/End: Complemental strand, 31932932 - 31932782
Alignment:
| Q |
166 |
aacatatatatgaaaaccagttaccttatatgcgtctgcaacaataagatcaccatttccatcaaaagccaaaccaagtggtcttccacctgtgttaacc |
265 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
31932932 |
aacatttatatgaaaaccagttaccttatgtgcgtctgcaacaataagttgaccatttccatcaaaagccaaaccaagtggtcttccatcggtgttaacc |
31932833 |
T |
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| Q |
266 |
caatcttcaaccaccgattcattcaccgttattctctttatccacccatct |
316 |
Q |
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| T |
31932832 |
caatcttcaaccaccgattcattcactgtgattctctttatccacccatct |
31932782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 166 - 330
Target Start/End: Original strand, 31370301 - 31370465
Alignment:
| Q |
166 |
aacatatatatgaaaaccagttaccttatatgcgtctgcaacaataagatcaccatttccatcaaaagccaaaccaagtggtcttccacctgtgttaacc |
265 |
Q |
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| T |
31370301 |
aacatttatatcaaaagcagttaccttgtctgcgtctgcaataataagttgaccatttccatcaaaagccaaaccaagtggtcttccacctgtgttaatc |
31370400 |
T |
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| Q |
266 |
caatcttcaaccaccgattcattcaccgttattctctttatccacccatcttcacaaccagtata |
330 |
Q |
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| T |
31370401 |
caatcttcaaccactgatccattcactgatattctcttaatccacccatcttcacaaccagtata |
31370465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 166 - 330
Target Start/End: Original strand, 31405434 - 31405598
Alignment:
| Q |
166 |
aacatatatatgaaaaccagttaccttatatgcgtctgcaacaataagatcaccatttccatcaaaagccaaaccaagtggtcttccacctgtgttaacc |
265 |
Q |
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||||| ||||| |||| |||||||||| | ||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31405434 |
aacatttatatcaaaagcagttaccttgtctgcgtctgcaataataagttgaccatttccatcaaaagccaaaccaagtggtcttccacctgtgttaatc |
31405533 |
T |
|
| Q |
266 |
caatcttcaaccaccgattcattcaccgttattctctttatccacccatcttcacaaccagtata |
330 |
Q |
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| T |
31405534 |
caatcttcaaccactgatccattcactgatattctcttaatccacccatcttcacaaccagtata |
31405598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 31384528 - 31384582
Alignment:
| Q |
19 |
atatctacaaatacctatataacatgttttaattggatttatttgtagagatatt |
73 |
Q |
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| T |
31384528 |
atatctacaaatacctatataacatgttttagttggattcatttgtagaaatatt |
31384582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 31369942 - 31369980
Alignment:
| Q |
19 |
atatctacaaatacctatataacatgttttaattggatt |
57 |
Q |
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| T |
31369942 |
atatctacaaatacctatataacatgttttaataggatt |
31369980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 45273517 - 45273466
Alignment:
| Q |
78 |
gagtttaataatggtgggttgacaattcaaaacaatatttcttatacaacca |
129 |
Q |
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| T |
45273517 |
gagtttaataatgatgggttgacaattcaaaacagttttgcatatacaacca |
45273466 |
T |
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