View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19328_high_12 (Length: 316)
Name: NF19328_high_12
Description: NF19328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19328_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 49 - 300
Target Start/End: Complemental strand, 47570396 - 47570145
Alignment:
| Q |
49 |
ttcgtctttcctttgctcctaattgacaacggttcaaaaattaaccgttgtcgttttgacctaaaaccctaatttgatttcgatgcattaacagatcaag |
148 |
Q |
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| T |
47570396 |
ttcgtctttcctttgctcctaattgacaacggttcaaaaattaaccgttgtctttttgacctaaaaccctaatttgatttcgatgcattaacagatcaag |
47570297 |
T |
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| Q |
149 |
aagaaccctagaattgaacaatcgaaatcaatggctacggcggagttagggcaacagacggtggagttatccaccctcgttactcgtgccgctcaagatt |
248 |
Q |
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| T |
47570296 |
aagaaccctagaattgaacaatcgaaatcaatggctacggcggagttagggcaacagacggtggagttatccaccctcgttactcgtgccgctcaagatt |
47570197 |
T |
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| Q |
249 |
catacaattcgcttaaagaacttgttgataaatgcaggtccaccgaattatc |
300 |
Q |
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| T |
47570196 |
catacaattcgcttaaagagcttgttgataaatgcaggtccaccgaattatc |
47570145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 47570441 - 47570412
Alignment:
| Q |
1 |
agagagagtgcggaatcacgaaagagcgcg |
30 |
Q |
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| T |
47570441 |
agagagagtgcggaatcacgaaagagcgcg |
47570412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 173 - 285
Target Start/End: Complemental strand, 38977648 - 38977536
Alignment:
| Q |
173 |
aaatcaatggctacggcggagttagggcaacagacggtggagttatccaccctcgttactcgtgccgctcaagattcatacaattcgcttaaagaacttg |
272 |
Q |
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| T |
38977648 |
aaatcaatggctacggcggagttaggccaacagacggtggagttatccaccctcgttactcgtgctgctcaggattcatacaattcacttaaagaccttg |
38977549 |
T |
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| Q |
273 |
ttgataaatgcag |
285 |
Q |
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| T |
38977548 |
ttcataaatgcag |
38977536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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