View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19328_high_4 (Length: 469)
Name: NF19328_high_4
Description: NF19328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19328_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 14 - 453
Target Start/End: Complemental strand, 49439014 - 49438575
Alignment:
| Q |
14 |
catcaatggcgctcagttttcgatatcaacttaaccaacagcatatgcaaagaatatggagagtattacgaggaaataacattgaatactcaatatgccc |
113 |
Q |
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| T |
49439014 |
catcaatggcgctcagttttcgatatcaacttaaccaacagcatatgcaaagaatatggagagtattgcgaggaaataacattgaatactcaatatgccc |
49438915 |
T |
|
| Q |
114 |
ttgatagctttaacgagtttgtgcactccattctgctcaagctagattccatcaagagttttcacctcaaggttggatatggtagttcttctcttggatc |
213 |
Q |
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| T |
49438914 |
ttgatagctttaacgagtttgtgtactccattctgctcaagctagattccatcaagagttttcacctcaaggttggatatggtagttcttctcttggatc |
49438815 |
T |
|
| Q |
214 |
ccgtggctttcccagtgtggtcaaatgggttgaccatgttgtacaccatggtgttgagagccttcgtctctttcctttcacttacagtgatatgaaattg |
313 |
Q |
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| T |
49438814 |
ccgtggctttcccagtgtggtcaaatgggttgatcatgttgtacaccatggtgttgagagccttcgtctctttcctttcacttacagtgatatgaaattg |
49438715 |
T |
|
| Q |
314 |
cccgttagcattttgaactgcaaaacccttgttgtgctcgacttgttttcatttaatgcgaaggatttttcttctgttagactcccctccctcaaaatcc |
413 |
Q |
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| T |
49438714 |
cccgttagcattttgaactgcaaaacccttgttgtgctcgacttgttttcatttaatgcgaaggatttttcttctgttagactcccctccctcaaaatcc |
49438615 |
T |
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| Q |
414 |
ttcgcttagaactttgttcatttctaaatgatcgagattt |
453 |
Q |
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| T |
49438614 |
ttcgcttagaactttgttcatttctaaatgatcgagattt |
49438575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 120 - 453
Target Start/End: Complemental strand, 49435065 - 49434732
Alignment:
| Q |
120 |
gctttaacgagtttgtgcactccattctgctcaagctagattccatcaagagttttcacctcaaggttggatatggtagttcttctcttggatcccgtgg |
219 |
Q |
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|||| |||||||||||| |||| || || ||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||| || || ||| |
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| T |
49435065 |
gcttcaacgagtttgtgtactctgttttgttcaagctagattccatcaagagtttctggctcaaggttggatataatggttctgatcttgcataccttgg |
49434966 |
T |
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| Q |
220 |
ctttcccagtgtggtcaaatgggttgaccatgttgtacaccatggtgttgagagccttcgtctctttcctttcacttacagtgatatgaaattgcccgtt |
319 |
Q |
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| T |
49434965 |
ctttcctagcgtagttaaatggctcaaccatgttgtaaaacgcggtgttgagagaattcttctcactcttttctctggcgttgatatgaaattgcccgtt |
49434866 |
T |
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| Q |
320 |
agcattttgaactgcaaaacccttgttgtgctcgacttgttttcatttaatgcgaaggatttttcttctgttagactcccctccctcaaaatccttcgct |
419 |
Q |
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| T |
49434865 |
agcattttgaactgcaaaacccttgtggagctccacttgttttcatttaatgtgaaaggtttttcctctgttagacttccctccctcaaaatcctttatt |
49434766 |
T |
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| Q |
420 |
tagaactttgttcatttctaaatgatcgagattt |
453 |
Q |
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| T |
49434765 |
tagaactttgttcgtttctaaatgctagagattt |
49434732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 443
Target Start/End: Original strand, 49415223 - 49415269
Alignment:
| Q |
397 |
cccctccctcaaaatccttcgcttagaactttgttcatttctaaatg |
443 |
Q |
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||||||||||||||||||||| ||||||| |||| ||||||||||| |
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| T |
49415223 |
cccctccctcaaaatccttcgtttagaacattgtatatttctaaatg |
49415269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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