View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19328_high_5 (Length: 453)

Name: NF19328_high_5
Description: NF19328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19328_high_5
NF19328_high_5
[»] chr4 (12 HSPs)
chr4 (15-438)||(38145637-38146060)
chr4 (123-415)||(38149468-38149760)
chr4 (287-416)||(36107958-36108087)
chr4 (287-365)||(21482741-21482819)
chr4 (276-364)||(38086358-38086446)
chr4 (276-347)||(36080163-36080234)
chr4 (287-416)||(36100699-36100828)
chr4 (277-346)||(37954200-37954269)
chr4 (276-364)||(38072848-38072936)
chr4 (289-364)||(38058520-38058595)
chr4 (289-364)||(38061859-38061934)
chr4 (287-353)||(34971558-34971624)
[»] chr2 (3 HSPs)
chr2 (57-438)||(11786802-11787183)
chr2 (289-410)||(11803584-11803705)
chr2 (292-344)||(11917650-11917702)
[»] chr6 (1 HSPs)
chr6 (287-365)||(6838770-6838848)


Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 15 - 438
Target Start/End: Complemental strand, 38146060 - 38145637
Alignment:
Q  15 tttcataacttgaagtagtgttcttgcttcaccaagaaaaacagcattataagaatttgtaatagttctttgagttttgtttccaacactagcagctggt 114  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38146060 tttcatgacttgaagtagtgttcttgcttcaccaagaaaaacagcattataagaatttgtaatagttctttgagttttgtttccaacactagcagctggt 38145961  T
Q  115 tggatgatgactctaatgaagagattttcatcaataaaaggtgctacttcttgccatctatgaagaatttttgtagcaccttgttctagagttttagtga 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38145960 tggatgatgactctaatgaagagattttcatcaataaaaggtgctacttcttgccatctatgaagaatttttgtagcaccttgttctagagttttagtga 38145861  T
Q  215 cagtaaaaactgtcactgttggtggaacaggaacaagctttatcttccaccaaagaagtataccaaagcttccacctccaccacctcttatagcccaaaa 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38145860 cagtaaaaactgtcactgttggtggaacaggaacaagctttatcttccaccaaagaagtataccaaagcttccacctccaccacctcttatagcccaaaa 38145761  T
Q  315 tagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaacgattcgagcatctaagacattatcaactccaagaccatattttctcatc 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38145760 tagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaacgattcgagcatctaagacattatcaacaccaagaccatattttctcatc 38145661  T
Q  415 aatgttccatatgcacctcctgtt 438  Q
    ||||||||||||||||||||||||    
T  38145660 aatgttccatatgcacctcctgtt 38145637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 123 - 415
Target Start/End: Complemental strand, 38149760 - 38149468
Alignment:
Q  123 gactctaatgaagagattttcatcaataaaaggtgctacttcttgccatctatgaagaatttttgtagcaccttgttctagagttttagtgacagtaaaa 222  Q
    |||||| |||||||||||||||||||||   |||||||||| ||||||||||| ||||| |||  |  |||||||||||||| | || || || || |||    
T  38149760 gactctgatgaagagattttcatcaatatttggtgctacttgttgccatctataaagaagtttgtttccaccttgttctagactctttgttactgtgaaa 38149661  T
Q  223 actgtcactgttggtggaacaggaacaagctttatcttccaccaaagaagtataccaaagcttccacctccaccacctcttatagcccaaaatagatcct 322  Q
    |||||||| |||  ||| |||||||| |  || ||||||||||| ||||  |  || ||||| || ||||| || |||||||| ||||||||||| || |    
T  38149660 actgtcacagtttttggcacaggaactaatttgatcttccaccagagaataactccgaagctacctcctccgcctcctcttattgcccaaaataggtctt 38149561  T
Q  323 ctcccatggcttttctgtcaagaatgttacccttcgcatcaacgattcgagcatctaagacattatcaactccaagaccatattttctcatca 415  Q
    ||||||| ||||| ||||||||||| || || || |||||||| |||||||| || |  || || || || ||||| ||||| ||||||||||    
T  38149560 ctcccattgctttcctgtcaagaatttttccattagcatcaacaattcgagcgtcaacaacgttgtctacaccaaggccatactttctcatca 38149468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 287 - 416
Target Start/End: Complemental strand, 36108087 - 36107958
Alignment:
Q  287 cacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaacgattcgagcatctaagacatt 386  Q
    |||| ||||||||||||||||||||||| ||||| |||||||| | |||||| |||||||| ||||||||  ||||||| |||   ||||| |  | |||    
T  36108087 caccaccaccacctcttatagcccaaaaaagatcttctcccattgattttctatcaagaatattacccttaacatcaaccatttttgcatcaataatatt 36107988  T
Q  387 atcaactccaagaccatattttctcatcaa 416  Q
    ||||||   ||||||| |||||||||||||    
T  36107987 atcaacagaaagaccaaattttctcatcaa 36107958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 287 - 365
Target Start/End: Complemental strand, 21482819 - 21482741
Alignment:
Q  287 cacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaac 365  Q
    |||| ||||||||||||||||||||||| ||||| |||||||| | |||||| ||||| || ||||| ||| |||||||    
T  21482819 caccaccaccacctcttatagcccaaaaaagatcttctcccattgattttctatcaaggatattaccattcacatcaac 21482741  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 364
Target Start/End: Complemental strand, 38086446 - 38086358
Alignment:
Q  276 accaaagcttccacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaa 364  Q
    |||||| ||| | |||||||||||||| ||||||||||| | |||||| ||||| |||| |||||||||||   |||||||| ||||||    
T  38086446 accaaaacttgctcctccaccacctctaatagcccaaaagaaatcctcacccattgcttctctgtcaagaaacctacccttcacatcaa 38086358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 347
Target Start/End: Complemental strand, 36080234 - 36080163
Alignment:
Q  276 accaaagcttccacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaat 347  Q
    |||||| ||| |||| |||||||| |||||||||||||||| ||| |||||||| | |||||| ||||||||    
T  36080234 accaaaacttgcaccaccaccaccccttatagcccaaaataaatcttctcccattgattttctatcaagaat 36080163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 287 - 416
Target Start/End: Complemental strand, 36100828 - 36100699
Alignment:
Q  287 cacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaacgattcgagcatctaagacatt 386  Q
    |||| |||||||| |||||||||||||||||||| |||||||| |  ||||| ||||| || ||||| ||  ||||||| |||   ||||| | || |||    
T  36100828 caccaccaccaccccttatagcccaaaatagatcttctcccattgactttctatcaaggatattaccattgacatcaacaatttttgcatcaatgatatt 36100729  T
Q  387 atcaactccaagaccatattttctcatcaa 416  Q
    |||||    ||||||| |||||||||||||    
T  36100728 atcaatagaaagaccaaattttctcatcaa 36100699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 277 - 346
Target Start/End: Complemental strand, 37954269 - 37954200
Alignment:
Q  277 ccaaagcttccacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaa 346  Q
    ||||||||| | |||||||| ||||| ||||||||||| |||||||| ||||| | || |||||||||||    
T  37954269 ccaaagcttgctcctccacctcctctaatagcccaaaacagatcctcacccatcgattctctgtcaagaa 37954200  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 364
Target Start/End: Complemental strand, 38072936 - 38072848
Alignment:
Q  276 accaaagcttccacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaa 364  Q
    |||||| ||| | |||||||||||||| ||||||||||| | ||| || ||||| |||| |||||||||||   |||||||| ||||||    
T  38072936 accaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaagaaacctacccttcacatcaa 38072848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 364
Target Start/End: Complemental strand, 38058595 - 38058520
Alignment:
Q  289 cctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaa 364  Q
    |||||||||||||| ||||||||||| | ||| || ||||| |||| |||||||||||   |||||||| ||||||    
T  38058595 cctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaagaaacctacccttcacatcaa 38058520  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 364
Target Start/End: Original strand, 38061859 - 38061934
Alignment:
Q  289 cctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaa 364  Q
    |||||||| ||||| ||||||||||| | |||||| ||||| |||| |||||||||||   |||||||| ||||||    
T  38061859 cctccacctcctctaatagcccaaaaaaaatcctcacccattgcttctctgtcaagaaacctacccttcacatcaa 38061934  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 353
Target Start/End: Original strand, 34971558 - 34971624
Alignment:
Q  287 cacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacc 353  Q
    |||| ||||||||||| ||||||||||| ||||| |||||||| |  ||||| |||||||| |||||    
T  34971558 caccaccaccacctctgatagcccaaaagagatcttctcccattgactttctatcaagaatattacc 34971624  T

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Target: chr2 (Bit Score: 146; Significance: 1e-76; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 57 - 438
Target Start/End: Original strand, 11786802 - 11787183
Alignment:
Q  57 agcattataagaatttgtaatagttctttgagttttgtttccaacactagcagctggttggatgatgactctaatgaagagattttcatcaataaaaggt 156  Q
    |||||| |||||| | |||||||||||||||||||||||| ||  ||||||||||||||| ||||| ||||| || ||||||||||||||||||   |||    
T  11786802 agcattgtaagaagtagtaatagttctttgagttttgtttgcagtactagcagctggttgaatgataactctcataaagagattttcatcaatagttggt 11786901  T
Q  157 gctacttcttgccatctatgaagaatttttgtagcaccttgttctagagttttagtgacagtaaaaactgtcactgttggtggaacaggaacaagcttta 256  Q
    ||||||||||||||| |||||| ||| ||  | ||| |||||||||   |||| || || |||||||| ||||| |||  ||||||||||||||| ||||    
T  11786902 gctacttcttgccatttatgaacaatcttacttgcatcttgttctaagcttttggtaacggtaaaaaccgtcacggtttttggaacaggaacaagtttta 11787001  T
Q  257 tcttccaccaaagaagtataccaaagcttccacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttaccctt 356  Q
    |||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| |  ||||| ||||| | |||||| || ||||| || || ||    
T  11787002 tcttccaccaaagaagaataccaaaacttccacctccaccacctctaatagcccaaaagaattcctcccccatagattttctatcgagaatatttccgtt 11787101  T
Q  357 cgcatcaacgattcgagcatctaagacattatcaactccaagaccatattttctcatcaatgttccatatgcacctcctgtt 438  Q
    |||||| || |||   || || |  ||||||||| ||||||||||||| ||||||||||  | |||||||||||||||||||    
T  11787102 cgcatcgactatttttgcgtcgagaacattatcagctccaagaccatactttctcatcatggatccatatgcacctcctgtt 11787183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 289 - 410
Target Start/End: Original strand, 11803584 - 11803705
Alignment:
Q  289 cctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaacgattcgagcatctaagacattat 388  Q
    |||||||| |||||||||||||||||||||||||| |||||   |||||| |  || || || || ||  |||| || ||| ||||||| |  |||||||    
T  11803584 cctccacctcctcttatagcccaaaatagatcctcacccatcaattttctatttaggatctttccattaacatctaccatttgagcatcaattacattat 11803683  T
Q  389 caactccaagaccatattttct 410  Q
    || || ||||||||||||||||    
T  11803684 cagctgcaagaccatattttct 11803705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 344
Target Start/End: Complemental strand, 11917702 - 11917650
Alignment:
Q  292 ccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaag 344  Q
    ||||||||||||||||||||||| ||||| |||||||| | |||||| |||||    
T  11917702 ccaccacctcttatagcccaaaaaagatcttctcccattgattttctatcaag 11917650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 287 - 365
Target Start/End: Complemental strand, 6838848 - 6838770
Alignment:
Q  287 cacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaac 365  Q
    |||| |||||||||||||| |||||||| ||||| |||||||| | |||||| |||||||| ||||||||  |||||||    
T  6838848 caccaccaccacctcttatggcccaaaaaagatcttctcccattgattttctatcaagaatattacccttaacatcaac 6838770  T

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