View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19328_high_6 (Length: 444)
Name: NF19328_high_6
Description: NF19328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19328_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 56 - 428
Target Start/End: Original strand, 13847590 - 13847969
Alignment:
| Q |
56 |
agggtgcctctaatatgga-cccaaattaaagggaccatggttgaaccttaataaatgacttacaccggccagtcagagnnnnnnnnnnc------cagg |
148 |
Q |
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| T |
13847590 |
agggtgcccctaatatagatcccaaattaaaggaaccatggttgaaccttaacaaatgacttacaccaaccggtcagagttttgttttttttttttcagg |
13847689 |
T |
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| Q |
149 |
gaaaaaactcctttaatgtaaacactcacaacatgtaacnnnnnnnnnnnn-ctgacaacacaaaaactccttttcatctgtagaaaatttattgatggg |
247 |
Q |
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| T |
13847690 |
gaaaaaacttctttcatgtaaacactcacaacatgtaaccaaaaaaaaaacactgacaacacaaaaactccttttcatctgtagaaaatttattgatggg |
13847789 |
T |
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| Q |
248 |
aaattttaaaatattcgatcnnnnnnngttaaagttgtaaatcttaatcattattcaggaggtgatttactaatcttcgatcaaacacttgagaaagaca |
347 |
Q |
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| T |
13847790 |
aaatttcaaaatattcgatctttttt-gttaaagttgtaaatcttaatcattattcaggaggtgatttactaatcttcgatcaaacacttgagaaagaca |
13847888 |
T |
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| Q |
348 |
accattaaaaaattactaattaaaatctagtgtttgaaataaaattggagcttgaaaaaccattagagataagcttgaaca |
428 |
Q |
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| T |
13847889 |
accattaaaaaattactaattaaaatctagtgtttgaaataaaattggagcttgaaaaaccattagagataagcttgaaca |
13847969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 13848398 - 13848332
Alignment:
| Q |
65 |
ctaatatggacc-caaattaaagggaccatggttgaaccttaataaatgacttacaccggccagtca |
130 |
Q |
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| T |
13848398 |
ctaatatggacctcaaattaaagggaccatgagtgaacctcaacaaatgacctacactagccagtca |
13848332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 200 - 428
Target Start/End: Original strand, 34343496 - 34343722
Alignment:
| Q |
200 |
ctgacaacacaaaaactccttttcatctgtagaaaatttattgatgggaaattttaaaatattcgatcnnnnnnn-gttaaagttgtaaatcttaatcat |
298 |
Q |
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| T |
34343496 |
ctgacaacacaaaaactccttttcatctgtagaaaatttattgatgggaaatttcaaaatattcgatcttttttttgttaaagttgtaaatcttaattat |
34343595 |
T |
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| Q |
299 |
tattcaggaggtgatttactaatcttcgatcaaacacttgagaaagacaaccattaaaaaattactaattaaaatctagtgtttgaaataaaattggagc |
398 |
Q |
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| T |
34343596 |
tattcaggaggtgatttactaatcttcgatcaaacacttgagaaagacaaccattaaaaaattac---ttaaaatctagtgtttgaaataaaattggagc |
34343692 |
T |
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| Q |
399 |
ttgaaaaaccattagagataagcttgaaca |
428 |
Q |
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| T |
34343693 |
ttgaaaaaccattagagataagcttgaaca |
34343722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 34343344 - 34343418
Alignment:
| Q |
57 |
gggtgcctctaatatggacccaaattaaagggaccatggttgaaccttaataaatgacttacaccggccagtcaga |
132 |
Q |
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| T |
34343344 |
gggtgcccttaatatggacccaaattaaagg-atcatggttgaaccttaacaaatgacttacatcagccagtcaga |
34343418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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