View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19328_low_1 (Length: 657)
Name: NF19328_low_1
Description: NF19328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19328_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 247 - 639
Target Start/End: Original strand, 36926256 - 36926648
Alignment:
| Q |
247 |
atatcattactatgtgacgaatagaagttctgatgaagggctgtgaagaagtgcaatctcgtgtaagagaggttgaagaaaagcgacatgagtgagtttc |
346 |
Q |
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| T |
36926256 |
atatcattactatgtgacgaatagaagttctgatgaagggctgtgaagaagtgcaatctcgtgtaagagaggttgaagaaaagcaacatgagtgagtttc |
36926355 |
T |
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| Q |
347 |
gagttaaccatatcaacaactactttgcagcccatctcaaattccacacaagtgagattgaggtattaaacatcggctcaaacaacactataggatccca |
446 |
Q |
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| T |
36926356 |
gagttaaccatatcaacaactactttgcagcccatctcaaattccacacaagtgagattgaggtattaaacatcggctcaaacaacattataggatccca |
36926455 |
T |
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| Q |
447 |
ccttgttatagaaacaaaccctgaaatgaatttgccatgtgaatctctaactagaccaccacatacaaagctaccagaatgacttatatgggactcatca |
546 |
Q |
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| T |
36926456 |
ccttgttatagaaacaaaccctgaaatgaatttgccatgtgaatctctaactagaccaccacatacaaagctaccagaatgacttatatgggactcatca |
36926555 |
T |
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| Q |
547 |
acacacaatctagagcagggggctacctcaattcttctagacaattaaagttgagttttgttatactgatcaattgattgtagatgtttatct |
639 |
Q |
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| T |
36926556 |
acacacaatctagaggagggggctacctcaattcttctagacaattaaagttgagttttgttatactgatcaattgattgtagatgtttatct |
36926648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 36925989 - 36926232
Alignment:
| Q |
9 |
gaagaatatacggtcaaaactcaaatgtaacaaatgaaactcaactctatggcccaatattcagattccacattaatgacgcaaattattctatagtcct |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
36925989 |
gaagaaaatacggtcaaaactcaaatgtaacaaatgaaactcaactctatggcccaatattcagattccacattaatgacacaaattattctatattcct |
36926088 |
T |
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| Q |
109 |
acattattattcatcacattgcatataacagctggttctctccaccctcctgagttctaactattaatgataatatttcaagatcaatgaggctttttct |
208 |
Q |
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| T |
36926089 |
acattattattcatcacattgcatataacagctggttctctccaccctcctgagttctaactattgatgataatatttcaagatcaatgaggctttttct |
36926188 |
T |
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| Q |
209 |
ttgaaggaatgccactattaatatatcaatacccttgtatatca |
252 |
Q |
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| T |
36926189 |
ttgaaggaatgccactattaatatatcaatacccttgtatatca |
36926232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 302 - 398
Target Start/End: Complemental strand, 36992120 - 36992024
Alignment:
| Q |
302 |
atctcgtgtaagagaggttgaagaaaagcgacatgagtgagtttcgagttaaccatatcaacaactactttgcagcccatctcaaattccacacaag |
398 |
Q |
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||||| |||| |||||||||||||||| |||||| |||||| || |||||| |||||| |||||||||||| || |||||||||||||||| |||| |
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| T |
36992120 |
atctcatgtatgagaggttgaagaaaaacgacataagtgagcttttagttaatcatatcgacaactactttggagtccatctcaaattccacccaag |
36992024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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