View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19328_low_12 (Length: 345)
Name: NF19328_low_12
Description: NF19328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19328_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 287
Target Start/End: Original strand, 5451582 - 5451860
Alignment:
| Q |
16 |
atagcagatgatatgaaagaatagatagagtgacaaaaagagaacgaaagtaaaagaaattcaagtacaactaaatagtgctatgctttactgaa--ctc |
113 |
Q |
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| T |
5451582 |
atagcagatgatatgaaagaatagatagagtgacaaaaagagaacgaaagtaaaagaaattcaagtacaactaaatagtgctatgctttactgaattctc |
5451681 |
T |
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| Q |
114 |
ttgatgtagctactatctagttagtgttgctaacactcaataacgtatgcaaaattgctactactagtactatacttttggttgccatagagtgagtaca |
213 |
Q |
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| T |
5451682 |
ttgatgtagctactatctagttagtgttgctaacactcaataacgtatgcaaaattgctactactagtactatacttttggttgccatagagtgagtaca |
5451781 |
T |
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| Q |
214 |
tatgagttggaaatcagttcagaaaactctctcaatatgctcaaag-----gaaaactttttacttgattggttgatga |
287 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5451782 |
tatgagttggaaatcagctcagaaaactctctcaatatgctcaaaggaaaagaaaactttttacttgattggttgatga |
5451860 |
T |
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