View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19328_low_14 (Length: 253)
Name: NF19328_low_14
Description: NF19328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19328_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 37806682 - 37806465
Alignment:
| Q |
18 |
aatatttcaaatgatactgtatattaaatttttaatttgacatttttatcatataaagaatcttcaatgaatgaagaaaataattatcattctcaatcaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37806682 |
aatatttcaaatgatactgtatattaaatttttaatttgacatttttattatataaagaatcttcaatgaatgaacaaaataattatcattctcaatcaa |
37806583 |
T |
|
| Q |
118 |
gccagagtggcgtaaacataagcaataataagaagtgatgaagcaaaatgaacctatcaaagataaaagcaagaggaatagtgaaagctgatgcaaaagc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37806582 |
gccagagtggcgtaaacataagcaataataagaagtgatgaagcaaaatgaacctatcaaagataaaagcaagaggaatagtgaaagctgatgcaaaagc |
37806483 |
T |
|
| Q |
218 |
gaggcggtaggcagaagc |
235 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37806482 |
gaggcggtaggcagaagc |
37806465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 37785849 - 37785787
Alignment:
| Q |
169 |
acctatcaaagataaaagcaagaggaatagtgaaagctgatgcaaaagcgaggcggtaggcag |
231 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||||| ||| ||||| |||| |
|
|
| T |
37785849 |
acctatcaaagataagagcaagaggaatggtgaaagctgatgcaaaagtgagacggtaagcag |
37785787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 37778737 - 37778668
Alignment:
| Q |
157 |
gaagcaaaatgaacctatcaaagataaaagcaagaggaatagtgaaagctgatgcaaaagcgaggcggta |
226 |
Q |
| |
|
||||||||||| ||||||||||| || |||||| |||| ||||||||| | ||||||| ||||||||| |
|
|
| T |
37778737 |
gaagcaaaatggacctatcaaagtaaacagcaaggggaacagtgaaagccgctgcaaaactgaggcggta |
37778668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University