View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19328_low_17 (Length: 222)
Name: NF19328_low_17
Description: NF19328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19328_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 102 - 206
Target Start/End: Complemental strand, 5525624 - 5525519
Alignment:
| Q |
102 |
tacataacaa-tccgatcatccaagagtccatttccagaccttgaacctcacatccaccgcacacttctcatctgccgtcgtcactttctcgccggcgac |
200 |
Q |
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| T |
5525624 |
tacataacaaatccgatcatccaagagtccatttccagaccttgaacctcacatccaccgcacacttctcatccgccgtcgtcactttctcgccggcgac |
5525525 |
T |
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| Q |
201 |
atcgat |
206 |
Q |
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|||||| |
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| T |
5525524 |
atcgat |
5525519 |
T |
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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 5525713 - 5525672
Alignment:
| Q |
11 |
aagaatattaattagtattaataataaaagcctctttgaaaa |
52 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5525713 |
aagaaaattaattagtattaataataaaagcctctttgaaaa |
5525672 |
T |
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