View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19328_low_3 (Length: 493)
Name: NF19328_low_3
Description: NF19328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19328_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 484
Target Start/End: Original strand, 12620813 - 12621283
Alignment:
| Q |
18 |
catttactactccaactgcttattttctaccacaccctgtctttgataaagctgagtattgccttcttacttctccctatcatcggtggtaaaccaaggt |
117 |
Q |
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|||||||||||||| ||| ||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12620813 |
catttactactccagctgtttattttctaccacagcttgtctttgataaagctgaatattgccttcttacttctccctatcatcggtggtaaaccaaggt |
12620912 |
T |
|
| Q |
118 |
attttccggttccaagtagatcacacgctcctaagatattggtaattgattgatgcaac-----ttggacattcctactatagaatatttcggacttagt |
212 |
Q |
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| T |
12620913 |
attttccggttccaagtagatcacatgctcctaagatgttggtaattgattgatgcaacgaatcttggatattcctactatagaatatttcggacttagt |
12621012 |
T |
|
| Q |
213 |
aaaggctgatggcttgacctgatgcttcctcataccttgttaaaattttcttcatcacatgagcttaactttcttctacttggaacaataggaaacattc |
312 |
Q |
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| T |
12621013 |
aa-ggttgatggcttgatccgatgcttcctcataaattgttaaaattttcttcatcacatgagcttaactttcttctacttgaaacaataggaaacattc |
12621111 |
T |
|
| Q |
313 |
atcagcaaacaataagtcagacaccaccgggacattacgataaatacgcacaccatgtagttccccttggttttcagcaattatgatcaatgctgataaa |
412 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12621112 |
atcagcaaacaataagtcagacaccaccggggcattacgataaatacgcacaccatgtagttccccttggtttttagcaattatgatcaatgctgataag |
12621211 |
T |
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| Q |
413 |
ccttcatcacatagaatgatatatgtaaggtgacagaggatctacttgcctcataccatgctctagaataat |
484 |
Q |
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| T |
12621212 |
ccttcatcacatagaatgatatatgtaaggtgacggaggatctactttcctcataccatgccctagaataat |
12621283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 176 - 465
Target Start/End: Original strand, 7092179 - 7092466
Alignment:
| Q |
176 |
cttggacattcctactatagaatatttcggacttagtaaaggctgatggcttgacctgatgcttcctcataccttgttaaaattttcttcatcacatgag |
275 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||| || ||||||| |||||||| ||| ||||||||||||| ||||||| ||||||||||||| |
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| T |
7092179 |
cttggacattcctactatagaatatttcggacataggaa-ggctgatagcttgacccaatggttcctcatacctttttaaaatccgattcatcacatgag |
7092277 |
T |
|
| Q |
276 |
cttaactttcttctacttggaacaataggaaacattcatcagcaaacaataagtcagacaccaccgggacattacgataaatacgcacaccatgtagttc |
375 |
Q |
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| T |
7092278 |
cttggctttcctctgcttagaagaacatgaaacgaccatcaacaaacaataaatgagacaccaccgggacactacgacaaatacgtacaccttgaagttc |
7092377 |
T |
|
| Q |
376 |
cccttggttttcagcaattatgatcaatgctgataaaccttcatcacatagaatgatatatgtaaggtgacagaggatctacttgcctca |
465 |
Q |
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| T |
7092378 |
ccctatattttcaacatatttaatcaatgttgataagccttcaacacacaaaatga-ataagtaaggtgatagagggtctccttgcctca |
7092466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 214 - 329
Target Start/End: Original strand, 15925412 - 15925527
Alignment:
| Q |
214 |
aaggctgatggcttgacctgatgcttcctcataccttgttaaaattttcttcatcacatgagcttaactttcttctacttggaacaataggaaacattca |
313 |
Q |
| |
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|||| ||||||||||||| |||||||| ||||||||||| ||||| | |||||| |||| ||||| ||| || ||| ||||||| || | ||||| || |
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| T |
15925412 |
aaggttgatggcttgacccgatgcttcttcataccttgtcaaaatctgcttcataacataagcttgactatcctctgcttggaagaacaaaaaacagtcg |
15925511 |
T |
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| Q |
314 |
tcagcaaacaataagt |
329 |
Q |
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| T |
15925512 |
tcagcaaacaataagt |
15925527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 271
Target Start/End: Original strand, 27953095 - 27953148
Alignment:
| Q |
218 |
ctgatggcttgacctgatgcttcctcataccttgttaaaattttcttcatcaca |
271 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| | |||||||||| |
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| T |
27953095 |
ctgatggcttgacctgatgcttcctcatactgtgttaaaatctgcttcatcaca |
27953148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 8723085 - 8723036
Alignment:
| Q |
18 |
catttactactccaactgcttattttctaccacaccctgtctttgataaa |
67 |
Q |
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|||||||||||||| ||||||||||||| |||||| | ||||||||||| |
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| T |
8723085 |
catttactactccagctgcttattttctgccacactcgatctttgataaa |
8723036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 34073038 - 34073092
Alignment:
| Q |
18 |
catttactactccaactgcttattttctaccacaccctgtctttgataaagctga |
72 |
Q |
| |
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|||||||||||||||||||| ||||| | |||||| ||||| |||||||| |||| |
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| T |
34073038 |
catttactactccaactgctaattttttgccacactctgtccttgataaaactga |
34073092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 247
Target Start/End: Complemental strand, 20469362 - 20469330
Alignment:
| Q |
215 |
aggctgatggcttgacctgatgcttcctcatac |
247 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
20469362 |
aggctgattgcttgacctgatgcttcctcatac |
20469330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 15788418 - 15788369
Alignment:
| Q |
18 |
catttactactccaactgcttattttctaccacaccctgtctttgataaa |
67 |
Q |
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|||||||||||||| ||||||||||||| |||||| | ||||||||||| |
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| T |
15788418 |
catttactactccagctgcttattttctgccacactcgatctttgataaa |
15788369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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