View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19328_low_8 (Length: 394)
Name: NF19328_low_8
Description: NF19328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19328_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 3 - 380
Target Start/End: Original strand, 54228008 - 54228382
Alignment:
| Q |
3 |
gaacaggcataaggttcactgatccagagcagccttcaatagaggtgcttacacaaattaatggattccccacaatactacaaaagtaacaacagtgaat |
102 |
Q |
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| T |
54228008 |
gaacaggcataagggtcactgatccagagcagccttcaatagaggtgcttacacaaattaatggattccccacaatactacaaaagtaaca---gtgaat |
54228104 |
T |
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| Q |
103 |
caagacaaaagcacaattgaaacactgaagtataattataagtttaaaacaatggaacactatcttgtccacatttgaaagaaagagaaaacatacttga |
202 |
Q |
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| T |
54228105 |
caagacaaaagcacaattgaaacactgaagtataattataagtttaaaataatggaacactatcttgtccacatttgaaagaaagagaaaacatacttga |
54228204 |
T |
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| Q |
203 |
atgatctagctggaaacttgggcaacggtccagtgagattgttaaaagacaagtccctgaatgtacagagttagcattagcatatctgagtttcatgata |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54228205 |
atgatctagctggaaacttgggcaacggtccagtgagattgttaaaagacaagtccctgaatgtacagagttagcattagcatatctgagtttcatgata |
54228304 |
T |
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| Q |
303 |
aaaatgttgacaaatagttttaaccatactcacaagaaagcaagctgtgtgatatttgacagtgaaacaggaaagggt |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54228305 |
aaaatgttgacaaatagttttaaccatactcacaagaaagcaagctgtgtgatatttgacagtgaaacaggaaagggt |
54228382 |
T |
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