View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19329_high_1 (Length: 675)
Name: NF19329_high_1
Description: NF19329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19329_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 633; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 16 - 660
Target Start/End: Complemental strand, 37072404 - 37071761
Alignment:
| Q |
16 |
atcacagaactatgaatcaactaattatactatgtatttttcactcgtaactataaaattaatattaatttataaattcctgactcaagttgtaaccgca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37072404 |
atcacagaactatgaatcaactaattatacta-gtatttttcactcgtaactataaaattaatattaatttataaattcctgactcaagttgtaaccgca |
37072306 |
T |
|
| Q |
116 |
gggaagggattgctattttcctctctttaatatggtttattttccccaaacactaaatgtcgaactatgtgctagtgaatccttcaacaacacaagtcta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37072305 |
gggaagggattgctattttcctctctttaatatggtttattttccccaaacactaaatgtcgaactatgtgctagtgaatccttcaacaacacaagtcta |
37072206 |
T |
|
| Q |
216 |
gtttcagtattgccaggtgcaatcgtcttaccgagtgaggaaactgatattgaaactgaaccatctgaagtgactaaaattcttccaaactgtagtgata |
315 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37072205 |
gtttcaatattgccaggtgcaatcgtcttaccgagtgaggaaactgatattgaaactgaaccatctgaagtgactaaaattcttccaaactgtagtgata |
37072106 |
T |
|
| Q |
316 |
atgagaataaaattgaattgcttgatcaagtatacagagctggtccaatgaggagtttgtcgtattcctctcttctaatagaaattaagacacctaccaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37072105 |
atgagaataaaattgaattgcttgatcaagtatacagagctggtccaatgaggagtttgtcgtattcctctcttctaatagaaattaagacacctaccaa |
37072006 |
T |
|
| Q |
416 |
aaacactgtgctacatatagcagctcagaatggcaatgataagattgtgagtcttgtagttgaacatgctccaacacttttgttcgagtttaatgaaaac |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37072005 |
aaacactgtgctacatatagcagctcagaatggcaatgataagattgtgagtcttgtagttgaacatgctccaacacttttgttcgagtttaatgaaaac |
37071906 |
T |
|
| Q |
516 |
aatgagagtgcgttacatattgctgcaagatgtggacacatctcaatcgttgaaaagctattgaaagcatatgctaatattgaacggcgtgatataagaa |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37071905 |
aatgagagtgcgttacatattgctgcaagatgtggacacatctcaatcgttgaaaagctattgaaagcatatgctaatattgaacggcgtgatataagaa |
37071806 |
T |
|
| Q |
616 |
cagcatggttagaatacactaacaatttggatagcccaaaagact |
660 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37071805 |
cagcatggttagaatacactaacaatttggatagcccaaaagact |
37071761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 239 - 637
Target Start/End: Complemental strand, 37081933 - 37081535
Alignment:
| Q |
239 |
cgtcttaccgagtgaggaaactgatattgaaactgaaccatctgaagtgactaaaattcttccaaactgtagtgataatgagaataaaattgaattgctt |
338 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| || || ||| ||||||||| ||| |||||||||| |
|
|
| T |
37081933 |
cgtcttacagagtgaggaaactgatattgaaattgaaccatctgaagtgactgaaattcttccaggctctattgacaatgagaatcaaaatgaattgctt |
37081834 |
T |
|
| Q |
339 |
gatcaagtatacagagctggtccaatgaggagtttgtcgtattcctctcttctaatagaaattaagacacctaccaaaaacactgtgctacatatagcag |
438 |
Q |
| |
|
|||||||||||||||||||| ||| |||| |||||| |||||||||||| |||||||||||||| ||| ||||||||||| ||||||||| ||| |
|
|
| T |
37081833 |
aatcaagtatacagagctggttcaaggagggatttgtcatattcctctctttcgccagaaattaagacacatacaaaaaacactgtcctacatatatcag |
37081734 |
T |
|
| Q |
439 |
ctcagaatggcaatgataagattgtgagtcttgtagttgaacatgctccaacacttttgttcgagtttaatgaaaacaatgagagtgcgttacatattgc |
538 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
37081733 |
cttggtatggcaatgataagattgtgagtcttgtaattgaacatgctccaaaacttttgttcgaggttaatgaaaacaacgagagtgcgttacatattgc |
37081634 |
T |
|
| Q |
539 |
tgcaagatgtggacacatctcaatcgttgaaaagctattgaaagcatatgctaatattgaacggcgtgatataagaacagcatggttagaatacactaa |
637 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| |||||||| ||| ||||||||||| |||||||| |
|
|
| T |
37081633 |
tgcaagaggtggacacatctcaatcgttgaaaagctattggcagcttatgctaattttgaacggcatgatataaaaacggcatggttagagtacactaa |
37081535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 397 - 658
Target Start/End: Original strand, 36952201 - 36952462
Alignment:
| Q |
397 |
aaattaagacacctaccaaaaacactgtgctacatatagcagctcagaatggcaatgataagattgtgagtcttgtagttgaacatgctccaacactttt |
496 |
Q |
| |
|
||||| |||||||| ||||| || ||||||||||| |||||| |||||| ||| || ||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
36952201 |
aaattgagacacctgtgaaaaataccgtgctacatattgcagcttggaatggtaataatgccattgtgaatcttgtagttgaacatgctccaaaactttt |
36952300 |
T |
|
| Q |
497 |
gttcgagtttaatgaaaacaatgagagtgcgttacatattgctgcaagatgtggacacatctcaatcgttgaaaagctatt-gaaagcatatgctaatat |
595 |
Q |
| |
|
|||| ||||| |||||||||| ||||| |||||| ||||||||||| ||||||||||| || |||| |||||||||| | ||| ||||||||||| |
|
|
| T |
36952301 |
gttcacatttaacaaaaacaatgatagtgccttacatgttgctgcaagaggtggacacatccaaaccgttaaaaagctattagcaag-ttatgctaatat |
36952399 |
T |
|
| Q |
596 |
tgaacggcgtgatataagaacagcatggttagaatacactaacaatttggatagcccaaaaga |
658 |
Q |
| |
|
|||||||| |||||||| || |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36952400 |
tgaacggcatgatataaaaatggcatggttagaatacactaacaatttggatgacccaaaaga |
36952462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 459 - 633
Target Start/End: Original strand, 36934797 - 36934971
Alignment:
| Q |
459 |
attgtgagtcttgtagttgaacatgctccaacacttttgttcgagtttaatgaaaacaatgagagtgcgttacatattgctgcaagatgtggacacatct |
558 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| |||||||||| ||||||| ||||||||||| ||||| |||||| ||||||| |||| ||||||||||| |
|
|
| T |
36934797 |
attgtgaatcttgtaattgaacatgctccaaaacttttgttcaagtttaacgaaaacaatgatagtgccttacatgttgctgctagatatggacacatct |
36934896 |
T |
|
| Q |
559 |
caatcgttgaaaagctatt-gaaagcatatgctaatattgaacggcgtgatataagaacagcatggttagaataca |
633 |
Q |
| |
|
||| ||||||||||||||| | ||| |||||||||||||||||| |||| |||| || ||||||||||| |||| |
|
|
| T |
36934897 |
caaccgttgaaaagctattagcaag-ttatgctaatattgaacggagtgagataaaaatggcatggttagagtaca |
36934971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 394 - 633
Target Start/End: Original strand, 36946293 - 36946532
Alignment:
| Q |
394 |
tagaaattaagacacctaccaaaaacactgtgctacatatagcagctcagaatggcaatgataagattgtgagtcttgtagttgaacatgctccaacact |
493 |
Q |
| |
|
|||||||| |||| ||||| ||||| || ||| ||||||| |||||| | |||| ||| || | ||||||| ||||||| |||||||| |||||| ||| |
|
|
| T |
36946293 |
tagaaattgagacccctacgaaaaatacagtgttacatattgcagcttcgtatggtaataatgacattgtgaatcttgtaattgaacattctccaaaact |
36946392 |
T |
|
| Q |
494 |
tttgttcgagtttaatgaaaacaatgagagtgcgttacatattgctgcaagatgtggacacatctcaatcgttgaaaagctatt-gaaagcatatgctaa |
592 |
Q |
| |
|
||||||| || || |||||||||| || | |||||| ||||||||||| ||||||||||||||| |||| ||| ||||| | ||| ||| |||| |
|
|
| T |
36946393 |
tttgttcacattcaacaaaaacaatgatagccccttacatgttgctgcaagaggtggacacatctcaaccgttaaaacactattagcaag-ttatactaa |
36946491 |
T |
|
| Q |
593 |
tattgaacggcgtgatataagaacagcatggttagaataca |
633 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
36946492 |
tattgaacggcgtgatataaaaatggcatggttagaataca |
36946532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 423 - 633
Target Start/End: Original strand, 36963645 - 36963855
Alignment:
| Q |
423 |
gtgctacatatagcagctcagaatggcaatgataagattgtgagtcttgtagttgaacatgctccaacacttttgttcgagtttaatgaaaacaatgaga |
522 |
Q |
| |
|
||||||||||| |||||| | |||| || ||| | ||||||| ||||||| ||||||||||||||| |||||||||| || || |||||||||| | |
|
|
| T |
36963645 |
gtgctacatattgcagcttcgtatggtaaagatgacattgtgaatcttgtaattgaacatgctccaaaacttttgttcacattcaacaaaaacaatgata |
36963744 |
T |
|
| Q |
523 |
gtgcgttacatattgctgcaagatgtggacacatctcaatcgttgaaaagctatt-gaaagcatatgctaatattgaacggcgtgatataagaacagcat |
621 |
Q |
| |
|
| | |||||| ||||||||||| ||||||||||||||| |||| ||| ||||| | ||| ||| |||||||||||||||||||||||| || |||| |
|
|
| T |
36963745 |
gccccttacatgttgctgcaagaggtggacacatctcaaccgttaaaacactattagcaag-ttatactaatattgaacggcgtgatataaaaatggcat |
36963843 |
T |
|
| Q |
622 |
ggttagaataca |
633 |
Q |
| |
|
|||||||||||| |
|
|
| T |
36963844 |
ggttagaataca |
36963855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 423 - 637
Target Start/End: Complemental strand, 12495808 - 12495594
Alignment:
| Q |
423 |
gtgctacatatagcagctcagaatggcaatgataagattgtgagtcttgtagttgaacatgctccaacacttttgttcgagtttaatgaaaacaatgaga |
522 |
Q |
| |
|
||||||||||| |||||| | |||| ||| || | ||||||| ||||||| |||||| || ||||| ||||||||| | ||||| |||||||||| | |
|
|
| T |
12495808 |
gtgctacatattgcagcttggtatggtaataatgaaattgtgaatcttgtaattgaacgtgttccaaaacttttgtttaaatttaacaaaaacaatgata |
12495709 |
T |
|
| Q |
523 |
gtgcgttacatattgctgcaagatgtggacacatctcaatcgttgaaaagctattgaaagcatatgctaatattgaacggcgtgatataagaacagcatg |
622 |
Q |
| |
|
|||| || ||| ||||||||| |||||||||| |||| ||||||||||||| | | |||| ||||||||||||| |||||||| || ||||| |
|
|
| T |
12495708 |
gtgcatttcatgttgctgcaaatggtggacacatttcaaccgttgaaaagctactagcaaattatgtgaatattgaacggcatgatataaaaatggcatg |
12495609 |
T |
|
| Q |
623 |
gttagaatacactaa |
637 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
12495608 |
gttagaatacactaa |
12495594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University