View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19329_high_2 (Length: 512)
Name: NF19329_high_2
Description: NF19329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19329_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 11 - 496
Target Start/End: Complemental strand, 35851884 - 35851397
Alignment:
| Q |
11 |
cagagataatcgaacatgagtgtttgagaagaaacatactccaaagttccaagccaatatcaccgcgtcaacccaagttggttaacccatatatatttaa |
110 |
Q |
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| T |
35851884 |
cagagataatcgaacatgagactttgagaagaaatatactccaaagttctaagccaatatcaccgggtcaacccaagtaggttaacccatatatatttaa |
35851785 |
T |
|
| Q |
111 |
ttgcttttttaaggaatatttaattgttgtttatttcctcaaaataatttaggcagacatctccagacagattaaagcattcttgcnnnnnnnnnnnnnn |
210 |
Q |
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| T |
35851784 |
ttgcttttttaaggaatatttaattgtagtttatttcctcaaaataatttaggcagacatctccagacagattaaagcattcttgcaaaaacaaaaacaa |
35851685 |
T |
|
| Q |
211 |
nn--cctacggcaattgtagtcctattaatatattttgctcatccaaaagaattaatggtttgaaatatgaaaatcgtaaacaagctcattctaatcaaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35851684 |
aaaacctacggcaattgtagtcctattaatatattttgctcatccaaaagaattaatggtttgaaatatgaaaatcgtaaacaagctcattctaatcaaa |
35851585 |
T |
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| Q |
309 |
tatatgtattggcaagccaacaatctgtattagcaacatgcaattgtgtaactttcttttagtatcatcaatatatcatatattctctcacaactttatg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35851584 |
tatatgtattggcaagccaacaatctgtattagcaacatgcaattgtgtaactttcttttagtatcatcaatatatcatatattctctcacaactttatg |
35851485 |
T |
|
| Q |
409 |
atcgactagctaggttgtattaattttcatattattattgacatggataaataaataaattaattaaattctaagaaagtgagagttt |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35851484 |
atcgactagctaggttgtattaattttcatattattattgacatggataaataaataaataaattaaattctaagaaagtgagagttt |
35851397 |
T |
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