View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19329_low_10 (Length: 263)

Name: NF19329_low_10
Description: NF19329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19329_low_10
NF19329_low_10
[»] chr4 (3 HSPs)
chr4 (1-245)||(25839952-25840196)
chr4 (117-200)||(55521413-55521497)
chr4 (117-179)||(9477408-9477470)
[»] chr8 (1 HSPs)
chr8 (117-182)||(26192685-26192750)
[»] chr5 (1 HSPs)
chr5 (133-199)||(35317366-35317432)
[»] chr3 (1 HSPs)
chr3 (117-161)||(20407311-20407355)
[»] chr2 (1 HSPs)
chr2 (117-177)||(26336716-26336776)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 25840196 - 25839952
Alignment:
Q  1 catgtttgatatctaagataggtgatccatattttcaatgccttaatatttcaggagaagatatgatgttaatgtcacacttgaatccaacaattagtta 100  Q
    |||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25840196 catgtttgatatctaagataagtaatccatattttcaatgccttaatgtttcaggagaagatatgatgttaatgtcacacttaaatccaacaattagtta 25840097  T
Q  101 aacaagtagttaaataattatatgcagagatcggggttcaaaccacagactctccacttcttcacattaaaatgtgtgaacttcaatcactaaattactt 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||    
T  25840096 aacaagtagttaaataattatatgtagagatcggggttcaaaccacagactctccacttcttcacattaaaatatgtgaactccaatcactagattactt 25839997  T
Q  201 nnnnnnntaactctaacctaaagactaatcatttaaaatacacat 245  Q
           ||||||||||||||||||||||||||||||||||||||    
T  25839996 aaaaaaataactctaacctaaagactaatcatttaaaatacacat 25839952  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 200
Target Start/End: Complemental strand, 55521497 - 55521413
Alignment:
Q  117 attatatgcagagatcggggttcaaaccacagactctccacttcttcaca-ttaaaatgtgtgaacttcaatcactaaattactt 200  Q
    ||||||||||||| ||||| ||| |||| || || ||||||||||||||| ||||||||||| |||||||  ||||||| |||||    
T  55521497 attatatgcagaggtcgggattcgaaccccaaacactccacttcttcacatttaaaatgtgtaaacttcagccactaaactactt 55521413  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 9477470 - 9477408
Alignment:
Q  117 attatatgcagagatcggggttcaaaccacagactctccacttcttcacattaaaatgtgtga 179  Q
    ||||||||||| ||||| |||||||||  ||||| | |||||| |||||||||||||||||||    
T  9477470 attatatgcagggatcgtggttcaaactccagacaccccacttattcacattaaaatgtgtga 9477408  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 26192750 - 26192685
Alignment:
Q  117 attatatgcagagatcggggttcaaaccacagactctccacttcttcacattaaaatgtgtgaact 182  Q
    ||||||||||||| ||||||||| |||| | ||| | |||||||| || |||||||||||||||||    
T  26192750 attatatgcagaggtcggggttcgaaccccggacaccccacttctccatattaaaatgtgtgaact 26192685  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 35317432 - 35317366
Alignment:
Q  133 ggggttcaaaccacagactctccacttcttcacattaaaatgtgtgaacttcaatcactaaattact 199  Q
    ||||||||||||  |||| |  |||||||||||||| ||||||||||||| ||  ||||||||||||    
T  35317432 ggggttcaaaccttagacacctcacttcttcacatttaaatgtgtgaactccagccactaaattact 35317366  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 20407311 - 20407355
Alignment:
Q  117 attatatgcagagatcggggttcaaaccacagactctccacttct 161  Q
    ||||||||||||||||||||||| |||| ||||| | ||||||||    
T  20407311 attatatgcagagatcggggttcgaaccccagacaccccacttct 20407355  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 26336716 - 26336776
Alignment:
Q  117 attatatgcagagatcggggttcaaaccacagactctccacttcttcacattaaaatgtgt 177  Q
    |||||||| || | ||||||||| |||| |  || ||||||||||||||||||||||||||    
T  26336716 attatatgaaggggtcggggttcgaacctcgaacactccacttcttcacattaaaatgtgt 26336776  T

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