View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19329_low_11 (Length: 222)
Name: NF19329_low_11
Description: NF19329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19329_low_11 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0008 (3 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 26070503 - 26070723
Alignment:
| Q |
2 |
aagtacaccaccagcatgattcccaccagcattactcccaccagcttgtgtatgcttcttagctttgcctttccctttatctgaatcagtctacagaaaa |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26070503 |
aagtacaccaccagcatgattcccaccagcattactcccaccagcttgtgtatgcttcttagctttgcctttccctttatctgaatcagtctacagaaaa |
26070602 |
T |
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| Q |
102 |
catacacaacattcattcaaactcatttcatatcatgtatacacaacattcatcctaaacagttcacaagattcaatcataccttgttagctcccttagg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26070603 |
catacacaacattcattcaaactcatttcatatcatgtatacacaacattcatcctaaacagttcacaagattcaatcataccttgttagctcccttagg |
26070702 |
T |
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| Q |
202 |
aagcttcctatctgcaccagt |
222 |
Q |
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||||||||||||||||||||| |
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| T |
26070703 |
aagcttcctatctgcaccagt |
26070723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 26070458 - 26070502
Alignment:
| Q |
5 |
tacaccaccagcatgattcccaccagcattactcccaccagcttg |
49 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26070458 |
tacaccaccagcattattcccaccagcattactcccaccagcttg |
26070502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 63 - 222
Target Start/End: Original strand, 270089 - 270248
Alignment:
| Q |
63 |
gctttgcctttccctttatctgaatcagtctacagaaaacatacacaacattcattcaaactcatttcatatcatgtatacacaacattcatcctaaaca |
162 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
270089 |
gctttgcctttccctttatctgaatcagtctacaaaaaacatacacaacattcattcaaactcatttcatatcatgtatacacaacattcatcctaaaca |
270188 |
T |
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| Q |
163 |
gttcacaagattcaatcataccttgttagctcccttaggaagcttcctatctgcaccagt |
222 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
270189 |
gttcacaagattcaatcataccttgttagctccctcaggaagcttcctatctgcaccagt |
270248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 269986 - 270033
Alignment:
| Q |
2 |
aagtacaccaccagcatgattcccaccagcattactcccaccagcttg |
49 |
Q |
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| T |
269986 |
aagtacaccaccagcatgattcccaccagcattactcccaccagcttg |
270033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 270008 - 270066
Alignment:
| Q |
9 |
ccaccagcatgattcccaccagcattactcccaccagcttgtgtatgcttcttagcttt |
67 |
Q |
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|||||||||| | |||||||||| | ||| || |||| ||||||||||||||||||||| |
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| T |
270008 |
ccaccagcattactcccaccagcttgactacctccagtttgtgtatgcttcttagcttt |
270066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 63 - 222
Target Start/End: Complemental strand, 181715 - 181556
Alignment:
| Q |
63 |
gctttgcctttccctttatctgaatcagtctacagaaaacatacacaacattcattcaaactcatttcatatcatgtatacacaacattcatcctaaaca |
162 |
Q |
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|||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||| | |
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| T |
181715 |
gctttgcctttccctttatctgcaccagtctacataaaacatacacaacattcattcaaacttatttcacatcatgtatacacaacattcatcataaata |
181616 |
T |
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| Q |
163 |
gttcacaagattcaatcataccttgttagctcccttaggaagcttcctatctgcaccagt |
222 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
181615 |
gttcacaagattcaatcataccttgttacctcccttaggaagcttcctatctgcaccagt |
181556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 181803 - 181738
Alignment:
| Q |
2 |
aagtacaccaccagcatgattcccaccagcattactcccaccagcttgtgtatgcttcttagcttt |
67 |
Q |
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||||||||||||| ||||| ||||||| || | ||| || |||| ||||||||||||||||||||| |
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| T |
181803 |
aagtacaccaccaacatgactcccaccggcttgactacctccagtttgtgtatgcttcttagcttt |
181738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 64 - 220
Target Start/End: Original strand, 20893442 - 20893598
Alignment:
| Q |
64 |
ctttgcctttccctttatctgaatcagtctacagaaaacatacacaacattcattcaaactcatttcatatcatgtatacacaacattcatcctaaacag |
163 |
Q |
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||||| ||||||||||||||| | ||||||||||||||||||| ||||||| |||||||||||||||| || |||||||||||| || |||| ||||||| |
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| T |
20893442 |
ctttgtctttccctttatctgcaccagtctacagaaaacatacgcaacattaattcaaactcatttcacattatgtatacacaagatgcatcataaacag |
20893541 |
T |
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| Q |
164 |
ttcacaagattcaatcataccttgttagctcccttaggaagcttcctatctgcacca |
220 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
20893542 |
ttcacaagattcaatcataccttgttacctcccttaggaagctttctatctgcacca |
20893598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 20893353 - 20893418
Alignment:
| Q |
2 |
aagtacaccaccagcatgattcccaccagcattactcccaccagcttgtgtatgcttcttagcttt |
67 |
Q |
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||||||||||| ||||||| |||||||||| | ||| || ||| ||||||||||||||||||||| |
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| T |
20893353 |
aagtacaccactagcatgactcccaccagcttgactaccttcagtttgtgtatgcttcttagcttt |
20893418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 64 - 222
Target Start/End: Complemental strand, 26360242 - 26360084
Alignment:
| Q |
64 |
ctttgcctttccctttatctgaatcagtctacagaaaacatacacaacattcattcaaactcatttcatatcatgtatacacaacattcatcctaaacag |
163 |
Q |
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|||| |||||||||||||||| | ||||||||||||||||||||||||| | ||||||| | |||||| ||||||||||||||| || |||| ||||||| |
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| T |
26360242 |
ctttccctttccctttatctgcaccagtctacagaaaacatacacaacactaattcaaatttatttcacatcatgtatacacaagatgcatcataaacag |
26360143 |
T |
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| Q |
164 |
ttcacaagattcaatcataccttgttagctcccttaggaagcttcctatctgcaccagt |
222 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||| |
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| T |
26360142 |
ttcacaagattcaatcataccttgttacctcccttaggaagattcctatctacaccagt |
26360084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 26360337 - 26360272
Alignment:
| Q |
2 |
aagtacaccaccagcatgattcccaccagcattactcccaccagcttgtgtatgcttcttagcttt |
67 |
Q |
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||||||| || |||||||| |||||||||| | ||| || |||| |||||| |||||||||||||| |
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| T |
26360337 |
aagtacaacagcagcatgactcccaccagcttgactacctccagtttgtgtgtgcttcttagcttt |
26360272 |
T |
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