View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19329_low_15 (Length: 203)
Name: NF19329_low_15
Description: NF19329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19329_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 48 - 190
Target Start/End: Original strand, 3659249 - 3659392
Alignment:
| Q |
48 |
tatatttgagaccacattgattataca-aatcatgattgttatctttactctttggtatgcgcgaacggccaaaccaccagacttcatccaccaaattat |
146 |
Q |
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| T |
3659249 |
tatatttgagaccacattgattatacagaatcatgattgttatctttactctttggtatgcacgaacggccaaaccatcgaacttcatccaccaaattat |
3659348 |
T |
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| Q |
147 |
ctctttgtttgaacaaaaatttatcatcacattaccttctctgc |
190 |
Q |
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| T |
3659349 |
ctatttgtttgaacaaaaatttatcatcacattaccttctctgc |
3659392 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 3504121 - 3504089
Alignment:
| Q |
21 |
aatgaatctaaaaaatgactttttgtttatatt |
53 |
Q |
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| T |
3504121 |
aatgaatctaaaaaatgaatttttgtttatatt |
3504089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 5856413 - 5856373
Alignment:
| Q |
13 |
catcatttaatgaatctaaaaaatgactttttgtttatatt |
53 |
Q |
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| T |
5856413 |
catcattaattgaatctaaaaaatgaatttttgtttatatt |
5856373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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