View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19329_low_4 (Length: 467)
Name: NF19329_low_4
Description: NF19329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19329_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 22 - 453
Target Start/End: Complemental strand, 1516445 - 1516014
Alignment:
| Q |
22 |
gtgctactttcttcttctgaatctgtttcactatcatcgtcagcagccaatgaaatcacaggctgagaattggaaatagctgactctgcagcagcaacag |
121 |
Q |
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| T |
1516445 |
gtgctactttcttcttctgaatctgtttcactatcatcgtcagcagccaatgaaatcacaggctgagaattggaaatagctgactctgcagcagcaacag |
1516346 |
T |
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| Q |
122 |
cctcaggtgtattaagatcggcaacaccaagcatcaaatcctgccaggaaacgtaatcgaaaaaatataatttaatattccactatttgcaagcaagtaa |
221 |
Q |
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| T |
1516345 |
cctcaggtgtattaagatcggcaacaccaagcatcaaatcctgccaggaaacgtaatcgaaaaaatataatttaatattccactatttgcaagcaagtaa |
1516246 |
T |
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| Q |
222 |
tatgacataaacacacaagtagaaggattattgatatgcaaagaaagataaaacattgactgaccatttcaataacttcagattcatttccagtcagccc |
321 |
Q |
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| T |
1516245 |
tatgacataaacacacaagtagaaggattattgatatgcaaagaaagataaaacgttgactgaccatttcaataacttcagattcatttccagttagccc |
1516146 |
T |
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| Q |
322 |
ttcaatatcatatttctctggatgttcctacannnnnnnagaattggagatataagaaaataggaaagaagtaaaaattatatcttcaactagaaagagt |
421 |
Q |
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| T |
1516145 |
ttcaatatcatatttctctggatgttcctacatttttttagaattggagatataagaaaataggaaagaagtaaaaattatatcttcaactagaaagagt |
1516046 |
T |
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| Q |
422 |
tttaacctttgcatcatgttccagctgcttat |
453 |
Q |
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| T |
1516045 |
ttaaacctttgcatcatgttccagctgcttat |
1516014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 27 - 168
Target Start/End: Original strand, 36613548 - 36613686
Alignment:
| Q |
27 |
actttcttcttctgaatctgtttcactatcatcgtcagcagccaatgaaatcacaggctgagaattggaaatagctgactctgcagcagcaacagcctca |
126 |
Q |
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| T |
36613548 |
actttcttcttctgaatctatttcactatcatc---agcagccaatgaaatcacaggctgacaactggaaacagctgactctgcagctgccacagcctct |
36613644 |
T |
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| Q |
127 |
ggtgtattaagatcggcaacaccaagcatcaaatcctgccag |
168 |
Q |
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| T |
36613645 |
ggtgtatgaagatcagcaacaccaagcatcaaatcctgccag |
36613686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 36613768 - 36613853
Alignment:
| Q |
268 |
gataaaacattgactgaccatttcaataacttcagattcatttccagtcagcccttcaatatcatatttctctggatgttcctaca |
353 |
Q |
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| T |
36613768 |
gatagaacattgactaaccatttcaataacttcggattcatttcccgttagctcttcaaaatcatatttctctggatggtcctaca |
36613853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 453
Target Start/End: Original strand, 36613909 - 36613972
Alignment:
| Q |
392 |
gtaaaaattatatcttcaactagaaa--gagttttaacctttgcatcatgttccagctgcttat |
453 |
Q |
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| T |
36613909 |
gtaaaaattatatcttcaattagaaatcaagctttaacctttgcatcatgctccaaccgcttat |
36613972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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