View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19329_low_5 (Length: 453)
Name: NF19329_low_5
Description: NF19329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19329_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 20 - 442
Target Start/End: Complemental strand, 41036592 - 41036178
Alignment:
| Q |
20 |
ttaatcccaatttacacacatcatcaccacttccactattttctgcattcccttttcatctacgtaccaaagttacacttgtaatattaaaagtgtacat |
119 |
Q |
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| T |
41036592 |
ttaatcccaatttacacacatcatcaccacttccactattttctgcattcccttttcatctac----caaagttacacttgtaatattaaaagtgtacat |
41036497 |
T |
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| Q |
120 |
atagcttgcacatataaaagccagtaattaatcaaaggagaaattgatgtatgatagcctatatgtttagtttcacttctacactcactattcttgcatt |
219 |
Q |
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| T |
41036496 |
atagcttgcacatataaaagccagtaattaatcaaaggagaaattgatgtatgatagcctatatgtttagtttcacatctacactcgctattcttgcatt |
41036397 |
T |
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| Q |
220 |
catatgccaatcgactgtgatttaacagaaactataaaatactgctttgatccttacacatattggacagtgatctgccgcaaaaagaaaccacgaaaca |
319 |
Q |
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| T |
41036396 |
catatgccaatcgactgtgatttaacagaaactataaaatactgctttgatccttacacatattggacagtgatctaccgcaaaaagaaaccacgaaaca |
41036297 |
T |
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| Q |
320 |
atagaaatcatgacgagccatgtggaccttatcagactgatcgagaaagcaatctacaatagactgacacagcagcatgagtaatattccctagaatctt |
419 |
Q |
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| T |
41036296 |
atagaaatcatgacgagccatgtggaccttatcagac----cgagaaagcaatctacaatagactgacacagcagcatgagtaatattccctagaatctt |
41036201 |
T |
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| Q |
420 |
acaattacccttaatatgatgat |
442 |
Q |
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| T |
41036200 |
acaattacccttaatattatgat |
41036178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 166 - 406
Target Start/End: Complemental strand, 41030863 - 41030621
Alignment:
| Q |
166 |
atgtatgatagcctatatgtttagtttcact---tctacactcactattcttgcattcatatgccaatcgactgtgatttaacagaaactataaaatact |
262 |
Q |
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| T |
41030863 |
atgtatgatagcctctatgtttgatttcactagttccacactcactatactcgcgttcatatgccaatcaacagtgatttaatagaaactacaaactata |
41030764 |
T |
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| Q |
263 |
gctttgatccttacacatattggacagtgatctgccgcaaaaaga---aaccacgaaacaatagaaatcatgacgagccatgtggaccttatcagactga |
359 |
Q |
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| T |
41030763 |
gctttgatccttatgcgtatcggaaactgatccaccacaaaaacaaacaactacgcagcattagaaatcgtgacgagccacatggaccttatca----ga |
41030668 |
T |
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| Q |
360 |
tcgagaaagcaatctacaatagactgacacagcagcatgagtaatat |
406 |
Q |
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| T |
41030667 |
tcgagaaagcaacctatggtagactgacacagcagcatgagtgatat |
41030621 |
T |
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