View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19329_low_8 (Length: 331)
Name: NF19329_low_8
Description: NF19329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19329_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 4774556 - 4774883
Alignment:
| Q |
1 |
atgtgattagtgttggcatatacgaatatgctgagaatcgtgagatcataagatgaatgagacatgtaagtcacgtaaaaaatatttcagtgcaaatata |
100 |
Q |
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| T |
4774556 |
atgtgattagtgttggcatatacgaatatgctgagaatcgtgagatcataagatgaatgagacatgtaagtcacgtaaaaaatatttcagtgtaaatata |
4774655 |
T |
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| Q |
101 |
taaagtgattcctctattttatttaacatattttcatagcatgtacgtgacagattgaagctggggaaggttgcaacggcaagtattctccaatggtccc |
200 |
Q |
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| T |
4774656 |
taaagtgattcctctattttatttaacatatttttatagcatgtacgtgacagattgaagctggggaaggttgcaacggcaagtattttccaatggtccc |
4774755 |
T |
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| Q |
201 |
aacaga--nnnnnnnnnnatagaaactaactaattatctttacaatatctaaggatttgtagagagaaatgcatgatctcttataaactttttcttactg |
298 |
Q |
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|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4774756 |
aacagattttttttttttatagaaactaagtaattatctttacaatatctaaggatttgtagagagaaattcatgatctcttataaactttttcttactg |
4774855 |
T |
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| Q |
299 |
cacttcattgtgtcgaatattcttggac |
326 |
Q |
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| T |
4774856 |
cacttcattgtgtcgaatattattggac |
4774883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 62 - 194
Target Start/End: Complemental strand, 23169187 - 23169055
Alignment:
| Q |
62 |
acatgtaagtcacgtaaaaaatatttcagtgcaaatatataaagtgattcctctattttatttaacatattttcatagcatgtacgtgacagattgaagc |
161 |
Q |
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||||||||||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23169187 |
acatgtaagtcacataacaaatatttcactacaaatatataaagtgattcctctattttatttaatatattttcatagcatgtacgtgacagattgaagc |
23169088 |
T |
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| Q |
162 |
tggggaaggttgcaacggcaagtattctccaat |
194 |
Q |
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| T |
23169087 |
tggggaaggttgcaacgacaagtaatctccaat |
23169055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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