View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1932_high_3 (Length: 400)
Name: NF1932_high_3
Description: NF1932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1932_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 282 - 382
Target Start/End: Complemental strand, 40005844 - 40005744
Alignment:
| Q |
282 |
tatatctatcaacctccaagtttagtcttgtccttctccaacttttcaaagaaaccagtaagagctttcaatgctttgacttgatactgcaaagcaacaa |
381 |
Q |
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| T |
40005844 |
tatatctatcaacctccaagtttagtcttgtccttctccaacttttcaaagaaaccagtaagagctttcaatgctttgacttgatactgtaaagcaacaa |
40005745 |
T |
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| Q |
382 |
t |
382 |
Q |
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| T |
40005744 |
t |
40005744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 40006106 - 40006014
Alignment:
| Q |
16 |
attaaaacttcaaaaaaaggatttaaacttgaaatnnnnnnnnntctaagaaatgggaaatatttttcttgatcccaattaaccaaaagtacaac |
110 |
Q |
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| T |
40006106 |
attaaaacttcaaaaaaaggatttaaacttgaaataaaaaaa--tctaagaaatgggaaatatttttcttgatcccaattaaccaaaagtacaac |
40006014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 228
Target Start/End: Complemental strand, 40005928 - 40005898
Alignment:
| Q |
198 |
gaacctctctaacctaaggaattcattccat |
228 |
Q |
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| T |
40005928 |
gaacctctctaacctaaggaattcattccat |
40005898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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