View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1932_high_6 (Length: 359)

Name: NF1932_high_6
Description: NF1932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1932_high_6
NF1932_high_6
[»] chr4 (2 HSPs)
chr4 (111-200)||(45954073-45954162)
chr4 (265-342)||(45953510-45953588)
[»] chr8 (2 HSPs)
chr8 (108-196)||(36675754-36675842)
chr8 (265-342)||(36675916-36675994)
[»] chr7 (1 HSPs)
chr7 (13-78)||(15127424-15127489)


Alignment Details
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 45954162 - 45954073
Alignment:
Q  111 gacaattgtgtcgcaacatttgcacgaatagctttatcacatgtatatactcatacctcgggctgtttaagaattttttgacacaagtaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45954162 gacaattgtgtcgcaacatttgcacgaatagctttatcacatgtatatactcatacctcgggctgtttaagaattttttgacacaagtaa 45954073  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 265 - 342
Target Start/End: Complemental strand, 45953588 - 45953510
Alignment:
Q  265 gggtgactacaaaatattatccaccccttcaaccgcttttctatatagtttgcagcggtgct-ctgcttcaataaaaac 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45953588 gggtgactacaaaatattatccaccccttcaaccgcttttctatatagtttgcagcggtgctcctgcttcaataaaaac 45953510  T

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Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 36675754 - 36675842
Alignment:
Q  108 tacgacaattgtgtcgcaacatttgcacgaatagctttatcacatgtatatactcatacctcgggctgtttaagaattttttgacacaa 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36675754 tacgacaattgtgtcgcaacatttgcacgaatagctttatcacatgtatatactcataactcgggctgtttaagaattttttgacacaa 36675842  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 265 - 342
Target Start/End: Original strand, 36675916 - 36675994
Alignment:
Q  265 gggtgactacaaaatattatccaccccttcaaccgcttttctatatagtttgcagcggtgct-ctgcttcaataaaaac 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36675916 gggtgactacaaaatattatccaccccttcaaccgcttttctatatagtttgcagcggtgctcctgcttcaataaaaac 36675994  T

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Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 15127424 - 15127489
Alignment:
Q  13 aaaattgaccaattaaataatacattagttttgaattgaccatctaacatatatatacttttcctt 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15127424 aaaattgaccaattaaataatacattagttttgaattgaccatctaacatatatatacttttcctt 15127489  T

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