View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1932_low_1 (Length: 697)
Name: NF1932_low_1
Description: NF1932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1932_low_1 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 331 - 690
Target Start/End: Complemental strand, 28275827 - 28275467
Alignment:
| Q |
331 |
tactatcagtttgaccaagttaatttagcttcactaatgttaaaaatatgtgcagaccaaaacctaaaaatttgagaagactgaagaataatttaataaa |
430 |
Q |
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| T |
28275827 |
tactatcagtttgaccaagttaatttagcttcactaatgttaaaaatatgtgcagaccaaaacctaaaaaatagagaagactgaagaataatttaataaa |
28275728 |
T |
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| Q |
431 |
tcctagagcatattccttgaatactgtcccttgtgtgtattatcatgattaaattagacagtttgaaactttgtattccttttatactattattacctta |
530 |
Q |
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| T |
28275727 |
tcctagagtatattccttgaatactgtcccttgtgtgtattatcatgattaaattagacagtttgaaactttgtattccttttatactattattacctta |
28275628 |
T |
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| Q |
531 |
aggttaatcatgcatatgtctatatgaaaaatcacaaacacacaaaaacatgattttaaacgcgcatgcaagcacgcgggaggttcacatgaat-tttta |
629 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28275627 |
aggttaatcatgcatatgtctatatgaaaaatcacaaacacacaaaaacatgattttaaacgcgcatgcaagcacgcgggaggttcacatgaatttttta |
28275528 |
T |
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| Q |
630 |
tatagatatgagctcaatttcattatgaaattgtcattattaattttgtttagtataatct |
690 |
Q |
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| T |
28275527 |
tatagatatgagctcaattccattatgaaattgtcattattaattttgtttagtataatct |
28275467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 28276088 - 28275966
Alignment:
| Q |
16 |
cacattccgcctaacaaagcatagtctacattcccaagcttaatttgtcacattcatatgtacaaaagtaaaaatgtatttgcctcaagcctaatacatg |
115 |
Q |
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| T |
28276088 |
cacattccgcctaacaaagcatagtctacattcccaagcttaatttgtcacattcatatgtacaaaagtaaaaatgtatttgccccaaccctaatacatg |
28275989 |
T |
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| Q |
116 |
gctcaagccattctaggagaaag |
138 |
Q |
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| T |
28275988 |
gctcaagccattctaggagaaag |
28275966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 168 - 283
Target Start/End: Complemental strand, 28275940 - 28275831
Alignment:
| Q |
168 |
agacgtctatgtcatcaaacttttctgagtgtgnnnnnnnnnnnnncgtgtccaaatctgtgtaaccacacacaagacctccttcgatatgtcacctcca |
267 |
Q |
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| T |
28275940 |
agacgtctatgtcatcaaacttttctgagtgtgtatatatatat--cgtgtccaaatctgtgta----cacagaagacctccttcgatatgtcacctcca |
28275847 |
T |
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| Q |
268 |
aatttacttaagttcc |
283 |
Q |
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| T |
28275846 |
aatttacttaagttcc |
28275831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 567 - 631
Target Start/End: Original strand, 67715 - 67778
Alignment:
| Q |
567 |
aacacacaaaaacatgattttaaacgcgcatgcaagcacgcgggaggttcacatgaatttttata |
631 |
Q |
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| T |
67715 |
aacacacgaaaacatgcttt-aaacgcgcgtgcaagcatgcaggaggttcacttcaatttttata |
67778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 567 - 631
Target Start/End: Complemental strand, 40898569 - 40898506
Alignment:
| Q |
567 |
aacacacaaaaacatgattttaaacgcgcatgcaagcacgcgggaggttcacatgaatttttata |
631 |
Q |
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||||||| |||||||| ||| |||||||| |||||||| || |||||||||| | |||||||||| |
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| T |
40898569 |
aacacacgaaaacatgcttt-aaacgcgcgtgcaagcatgcaggaggttcacttcaatttttata |
40898506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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