View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1932_low_13 (Length: 275)
Name: NF1932_low_13
Description: NF1932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1932_low_13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 24 - 275
Target Start/End: Complemental strand, 33456765 - 33456508
Alignment:
| Q |
24 |
ttgatttgaattagggtttgataattgtctactaaatttattcttcttgaattgaccccttccaacactacaaaactcttccaacaattcttgagcagct |
123 |
Q |
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| T |
33456765 |
ttgatttgaattagggtttgataattgtctactaaatttattcttcttgaattgaccccttccaacactgcaaaactcttccaacaattcttgagcagct |
33456666 |
T |
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| Q |
124 |
ttaacatattttgaattcctcaacacattaacaacacctaaagaagaag------aagatgaaccaaatccaacatgtccttgatgaatatgattaatct |
217 |
Q |
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| T |
33456665 |
ttaacatattttgaattcctcaacacattaacaacacctaaagaagaagaagaagaagatgaaccaaatccaacatgtccttgatgaatatgattaatct |
33456566 |
T |
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| Q |
218 |
gtcctaatccacctccttgtaaatgatgatgatgaacactaccaagattcttgtaaga |
275 |
Q |
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| T |
33456565 |
gtcctaatccacctccttgtaaatgatgatgatgaacactaccaagattcttgtaaga |
33456508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 7066304 - 7066368
Alignment:
| Q |
76 |
tgaccccttccaacactacaaaactcttccaacaattcttgagcagctttaacatattttgaatt |
140 |
Q |
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| T |
7066304 |
tgaccccttccaacactgcaaaactcttgaagcaattcttgagtaggtttcatatattttgaatt |
7066368 |
T |
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