View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1932_low_15 (Length: 237)
Name: NF1932_low_15
Description: NF1932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1932_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 33456452 - 33456228
Alignment:
| Q |
1 |
attcttaaatcctctgaatgatgatgttgtaacgaagacgataacgacaacgaaaggccttgtccttcaacaacacttgccatttctggttggttgttgt |
100 |
Q |
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| T |
33456452 |
attcttaaatcctctgaatgatgatgttgtaaggaagacgataacgacaacgaaagaccttgtccttcaacaacacttgccatttctggttggttgttgt |
33456353 |
T |
|
| Q |
101 |
tgagttggtgatgacttgatgttgctcctcctcc---tccttcttgagcccatgtgaattgaccgaaagaccctccggctccggaattataaccttggag |
197 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
33456352 |
tgagttggtgatgacttgatgttgctcctcctcctcctccttcttgagcccatgtgaattgtccaaaagaccctccggctccggaattataaccttggag |
33456253 |
T |
|
| Q |
198 |
attagtagttgaaggattgggaagt |
222 |
Q |
| |
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|||||| |||||||||||||||||| |
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| T |
33456252 |
attagttgttgaaggattgggaagt |
33456228 |
T |
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