View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1932_low_19 (Length: 209)
Name: NF1932_low_19
Description: NF1932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1932_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 55125817 - 55126015
Alignment:
| Q |
1 |
ttcttcttcatctgcttctgtggttcttgattattactactattttgtatagctcccaataattcagccagctctgactttgaaatctttaatgttacct |
100 |
Q |
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| T |
55125817 |
ttcttcttcatctgcttctgtggttcttgattattactactattttgaatagctcccaataattcagccagctctgactttgaaatctttaatgttacct |
55125916 |
T |
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| Q |
101 |
tcccacttgcatctccagaagctctaagcctttctaatagatcattctctttctgaggatgatcaagatgagcttcatcaaacaccttacttgatgatg |
199 |
Q |
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| T |
55125917 |
tcccacttgcatctccagaagctctaagcctttctaatagatcattctctttctgaggatgatcaagatgagcttcatcaaacaccttacttgatgatg |
55126015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 45 - 199
Target Start/End: Original strand, 55130674 - 55130828
Alignment:
| Q |
45 |
ttgtatagctcccaataattcagccagctctgactttgaaatctttaatgttaccttcccacttgcatctccagaagctctaagcctttctaatagatca |
144 |
Q |
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|||||| ||||||||||||||||| || || |||||||||||| || || ||||||||||||||||| | ||||||||||||| || |||||| |||| |
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| T |
55130674 |
ttgtatcgctcccaataattcagcgagttcgctctttgaaatcttcaacgtcaccttcccacttgcatcacaagaagctctaagctttcctaatacatca |
55130773 |
T |
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| Q |
145 |
ttctctttctgaggatgatcaagatgagcttcatcaaacaccttacttgatgatg |
199 |
Q |
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| T |
55130774 |
ttctccttctggtgatgatcaagactagcttcatcaaacaccttgcttgatgatg |
55130828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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