View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1932_low_2 (Length: 610)
Name: NF1932_low_2
Description: NF1932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1932_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 48754873 - 48755175
Alignment:
| Q |
17 |
ttatttactaattttgaatgggttttactgttgctctggattttggaccatacttttgttactatttttggagtcttttagtttttaatgtggctatgga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48754873 |
ttatttactaattttgaatgggttttaccgttgctctggattttggaccatacttttgttactatttttggagtcttttagtttttaatgtgactatgga |
48754972 |
T |
|
| Q |
117 |
ttgtggaccatacttttctaaagattggtcgtaatttatttacttatctaagagtaaatgtttttactcttttgtacagatcattttgtacttgtccgag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48754973 |
ttgtggaccatacttttctaaagattggtcgtaatttatttacttatctaagagtaaatgtttttactcttttgtacaaatcattttgtacttgtccgag |
48755072 |
T |
|
| Q |
217 |
tttatatattgatgaaattgatttgaattttcttctaatgcttaatgcttttggtatttatcatatcattcatatgtgatggtgctttcaaggatgcttg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48755073 |
tttatatattgatgaaattgatttgaattttcttctaatgcttaatgcttttggtatttatcatatcattcatatgtgatggtgctttcaaggatgcttg |
48755172 |
T |
|
| Q |
317 |
gta |
319 |
Q |
| |
|
||| |
|
|
| T |
48755173 |
gta |
48755175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 382 - 589
Target Start/End: Original strand, 48755238 - 48755443
Alignment:
| Q |
382 |
acaaaagtcttgcacatgaattatatcttgtcaaatgtgaatatgtgatacacnnnnnnnnaagtatattacatttgatataacttgttgcaattgtatt |
481 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
48755238 |
acaaaagtcttgcaaatgaattatatcttgtcaaatgtgaatatgtgatacacttttttttaagtat--tacatttgatataacttgttgcaattgtatt |
48755335 |
T |
|
| Q |
482 |
tcttgttagttttttagtgttccttggattccttttgtatttatgttacaatcttgatctttgggaagagttggaaaatatcaacaccaacattcttgga |
581 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48755336 |
tcttgttagttttttagtgttccttggattccttttgtatttatgttacaatcttgatctttgggaagagttggaaaatatcaacaccaacattcttgga |
48755435 |
T |
|
| Q |
582 |
tcttttac |
589 |
Q |
| |
|
|||||||| |
|
|
| T |
48755436 |
tcttttac |
48755443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 44453160 - 44453206
Alignment:
| Q |
148 |
taatttatttacttatctaagagtaaatgtttttactcttttgtaca |
194 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||| |||||| |||| |
|
|
| T |
44453160 |
taatttatttacttatttaagagaaaatgtttttattcttttttaca |
44453206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University