View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1932_low_3 (Length: 538)
Name: NF1932_low_3
Description: NF1932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1932_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 1 - 538
Target Start/End: Complemental strand, 41275388 - 41274852
Alignment:
| Q |
1 |
caccctaaatttaattctataaaaaatgaagataagcaattcttacacctaannnnnnnnaaaatcggtgaagatatcgtgttcaattctaagttactca |
100 |
Q |
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| T |
41275388 |
caccctaaatttaattctataaaaaatgaagataagcaattcttacacctaattttttttaaa-tcggtgaagatatcgtgttcaattctaagttactca |
41275290 |
T |
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| Q |
101 |
aaagtcaatgtgaaatctcgacctcctcataacccaacacctcataataatattcatgctactactttataaagtattactcattcagtctcacattgta |
200 |
Q |
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| T |
41275289 |
aaagtcaatgtgaaatctcgacctcctcatgacccaacacctcataataatattcatgctactactttataaagtattactcattccgtctcacattgta |
41275190 |
T |
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| Q |
201 |
aatcaatttgcaaaaacaattgtcctaaacataaatcgttttacaatactaatcaaacattaatttttaaatcatatatttttctatctatggtggaacc |
300 |
Q |
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| T |
41275189 |
aatcaatttgcaaaaacaattgtcccaaacataaatcgttttacaatactaatcaaacattaatttttaaatcaaatatttttctatctatggtggaacc |
41275090 |
T |
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| Q |
301 |
tctttccacatcctgtgtatgtgaaagttttgtacaccgaactgcccctatatatatttttctttctattcgtttctctaggctattaatttctcatgct |
400 |
Q |
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| T |
41275089 |
tctttccacatcctgtgtatgtgaaagttttgtacaccgaactgcccctatatatatttttctttctattcgtttctctaggctattaatttctcatgct |
41274990 |
T |
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| Q |
401 |
gagaagaatacttttataaagtaactcataatttattttttctatataaaactaaatacatttatttatttgcatagtaaaatattcaaagtgacttatt |
500 |
Q |
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| T |
41274989 |
gagaagaatacttttataaagtaactcataatttattttttctatataaaactaaataaatttatttatttgcatagtaaaatattcaaagtgacttatt |
41274890 |
T |
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| Q |
501 |
atttgcaaagcaaaagcacatgaagaagataagaaatt |
538 |
Q |
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| T |
41274889 |
atttgcaaagcaaaagcacatgaagaaaataagaaatt |
41274852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 227 - 264
Target Start/End: Original strand, 33975544 - 33975581
Alignment:
| Q |
227 |
aaacataaatcgttttacaatactaatcaaacattaat |
264 |
Q |
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| T |
33975544 |
aaacataaatcgttttacaatactaatgaaacattaat |
33975581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 469
Target Start/End: Complemental strand, 1849548 - 1849487
Alignment:
| Q |
408 |
atacttttataaagtaactcataatttattttttctatataaaactaaatacatttatttat |
469 |
Q |
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| T |
1849548 |
atacttttataaagtaattcataatttttctttactatataaaattaattatatttctttat |
1849487 |
T |
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