View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1932_low_5 (Length: 364)
Name: NF1932_low_5
Description: NF1932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1932_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 10 - 347
Target Start/End: Original strand, 10879384 - 10879721
Alignment:
| Q |
10 |
aagaatattgagaagaaagtatggagcctgcatcctccaaatgtgtagaaagagttgtcgatgttgtgttggacctgactattcggcatgtgggttacat |
109 |
Q |
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| T |
10879384 |
aagaaaattgagaagaaagtatggagcctgcatcctccaaatgtgtagaaaaagctgttgattttgtgttgtacctgactattcggcatgtgggttacat |
10879483 |
T |
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| Q |
110 |
cttctattacaaggaaaatgttagtaaactaaacagtctagttgagaagctaattcttgaaagagagagcctggaacgtcgagtagataaagctgaggat |
209 |
Q |
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| T |
10879484 |
cttctattacaaggaaaatgttagtgaactaaacagtctagttgagaagctaattcttgaaagagagagcctggaacatcgagtagataaagctgaggat |
10879583 |
T |
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| Q |
210 |
aatctaggaataaccgaaagtaatgttgcaacttggcttcagaaagtggataaaactagaactgaaacggagaagtttcaagatgataaaggccatgcca |
309 |
Q |
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| T |
10879584 |
aatctaggaataaccgaaagtaatgttgcaacttggcttcagaaagtggataaaactagaactgaaacggagaagtttcaagatgataaaggccatgcga |
10879683 |
T |
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| Q |
310 |
agacaaggttttccagtggtttatttcattacttgagg |
347 |
Q |
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| T |
10879684 |
agacaaggttttccagtggtttatttcattacttgagg |
10879721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 45 - 347
Target Start/End: Original strand, 10848023 - 10848325
Alignment:
| Q |
45 |
tccaaatgtgtagaaagagttgtcgatgttgtgttggacctgactattcggcatgtgggttacatcttctattacaaggaaaatgttagtaaactaaaca |
144 |
Q |
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| T |
10848023 |
tccaaatttgtagaaagagctgtcgatgttgtgttggacctgactgttcggcatgtgggttacatcttctattacaaggacaatgttagtgaactaaaca |
10848122 |
T |
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| Q |
145 |
gtctagttgagaagctaattcttgaaagagagagcctggaacgtcgagtagataaagctgaggataatctaggaataaccgaaagtaatgttgcaacttg |
244 |
Q |
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||| ||||||||||||| |||||||||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10848123 |
atcttgttgagaagctaagtcttgaaagaaagaggctggaacatcgagtagatgaagctgaggataatctaggaataaccgaaagtaatgttgcagcttg |
10848222 |
T |
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| Q |
245 |
gcttcagaaagtggataaaactagaactgaaacggagaagtttcaagatgataaaggccatgccaagacaaggttttccagtggtttatttcattacttg |
344 |
Q |
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| T |
10848223 |
gcttcagaaagtggataaaactagaactgaaacggaggagtttcaagatgatgaaggccacacgaagacaaggttttccagtggtttatttcattacctg |
10848322 |
T |
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| Q |
345 |
agg |
347 |
Q |
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||| |
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| T |
10848323 |
agg |
10848325 |
T |
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