View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1932_low_6 (Length: 361)
Name: NF1932_low_6
Description: NF1932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1932_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 14 - 350
Target Start/End: Complemental strand, 38310251 - 38309915
Alignment:
| Q |
14 |
catattactttatgtaagataaggtgagactttgagggccagccggagtgggctggagggaacaagagtgggagcagtgcgannnnnnnccccttaccgt |
113 |
Q |
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| T |
38310251 |
catattactttatgtaagataaggtgagactttgagggccagccggagtgggctggagggagcaagagtgggagcagtgcgattttttttcccttcccgt |
38310152 |
T |
|
| Q |
114 |
ttttatgtgtaaataaagatttatactctaatctatagagtccatgacacagtttacattcatttatgtcatcttctgtatcacttctgttaattatcag |
213 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38310151 |
ttttatgtgtaaataaagatttatactctaatctctagagtccatgacacagtttacattcatttatgtcatcttctgtatcacttctgttaattatcag |
38310052 |
T |
|
| Q |
214 |
ttttcgttgtaatattttgatcagcaaccatgtcagctttaactcaataagggattagtatctggtagatttcttgcatctaatctctggttaagtgcag |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38310051 |
ttttcgttgtaatattttgatcagcaaccatgtcagctttaactcaataagggattagtatttggtagatttcttgcatctaatctctggttaagtgcag |
38309952 |
T |
|
| Q |
314 |
caaaattaccatttgcattattggcaagtattatcta |
350 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
38309951 |
caaaattaccatttgcattattggcaagtattatcta |
38309915 |
T |
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