View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1932_low_8 (Length: 355)
Name: NF1932_low_8
Description: NF1932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1932_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 16360485 - 16360149
Alignment:
| Q |
1 |
atacactatattacaaagggctctacaaattctaaatgccataaattagccaaaaatagaatataaaattacaaagaacgacatgatacatgtgaggtat |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
16360485 |
atacactatattacaaatggctctacaaattctaaatgccataaattagccaaaaatagaatataaaattacaaagaacggcatgatacctgtgaggtat |
16360386 |
T |
|
| Q |
101 |
tttcactgctactcagaatctgttcatcgttactgttagccatcacaacaaattaaatgtctgcattcagaaattttcacgacatcttatcagaacaaag |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
16360385 |
tttcactgctactcagaatttgttcatcgttactgttagccatcacaacaaattaaaagtctgcaatcagaaattttcacgacatcttatcagaacaaag |
16360286 |
T |
|
| Q |
201 |
ttacaaaaatggaagaaattatacattcaaatgaaataggcagacacttacatgtataaaactccaattttgataaaaccccttcgtggatttgcgctta |
300 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
16360285 |
ttacaaaaatggaagatattatacattcaaatgaaataggcagacacttacatatataaaaatccaattttgataaaacccctttgtggatttgcgctta |
16360186 |
T |
|
| Q |
301 |
ctcactaccacagatctgttaagttcagattatccct |
337 |
Q |
| |
|
|||||| ||||||||||||| |||||| ||||||||| |
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| T |
16360185 |
ctcactgccacagatctgttgagttcaaattatccct |
16360149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 43621118 - 43621455
Alignment:
| Q |
1 |
atacactatattacaaagggctctacaaattctaaatgccataaattagccaaaaatagaatataaaattacaaagaacgacatgatacatgtgaggtat |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||| |
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| T |
43621118 |
atacactatattacaaagggctctacaaattctaaatgccataaattagccaaaaatagaatataaaattacaaagaaaggcatgatacctgtgaggtat |
43621217 |
T |
|
| Q |
101 |
tttcactgctactcagaatctgttcatcgttactgttagccatcacaacaaattaaatgtctgcattcagaaattttcacgacatcttatcagaacaaag |
200 |
Q |
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||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| |||||| ||||||||||||||||||| |
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| T |
43621218 |
tttcactgctactcataatctgttcattgttactgttagccatcacaacaaattaaaagtctgcattcaaaaaatttcacaacatcttatcagaacaaag |
43621317 |
T |
|
| Q |
201 |
ttacaaaaatggaagaaattatacattcaaatgaaataggcagacacttacatgtataaaactccaattttgat-aaaaccccttcgtggatttgcgctt |
299 |
Q |
| |
|
|||| |||||| |||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
43621318 |
ttaccaaaatgaaagatattatacattcaaatgaaataggcagacacttacgtatataaaactccaattttgataaaaacccctttgtggatttgcgctt |
43621417 |
T |
|
| Q |
300 |
actcactaccacagatctgttaagttcagattatccct |
337 |
Q |
| |
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||||||| ||||||||||||| |||||| ||||||||| |
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| T |
43621418 |
actcactgccacagatctgttgagttcatattatccct |
43621455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 228 - 337
Target Start/End: Original strand, 34081386 - 34081494
Alignment:
| Q |
228 |
caaatgaaataggcagacacttacatgtataaaactccaattttgataaaaccccttcgtggatttgcgcttactcactaccacagatctgttaagttca |
327 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||| || ||||| ||||||| |||||| |
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| T |
34081386 |
caaatgaaataggcagacacttacatatataaaactccaattttgataaaacccctttgtggatttgcg-ttactccctgccacaaatctgttgagttca |
34081484 |
T |
|
| Q |
328 |
gattatccct |
337 |
Q |
| |
|
|||||||||| |
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|
| T |
34081485 |
gattatccct |
34081494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 232 - 337
Target Start/End: Original strand, 12720268 - 12720372
Alignment:
| Q |
232 |
tgaaataggcagacacttacatgtataaaactccaattttgataaaaccccttcgtggatttgcgcttactcactaccacagatctgttaagttcagatt |
331 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||| || ||||| ||||||| |||||||||| |
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| T |
12720268 |
tgaaataggcagacacttacatatataaaactccaattttgataaaacccctttgtggatttgcg-ttactccctgccacaaatctgttgagttcagatt |
12720366 |
T |
|
| Q |
332 |
atccct |
337 |
Q |
| |
|
|||||| |
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|
| T |
12720367 |
atccct |
12720372 |
T |
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