View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1932_low_9 (Length: 345)
Name: NF1932_low_9
Description: NF1932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1932_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 20 - 335
Target Start/End: Complemental strand, 47068765 - 47068450
Alignment:
| Q |
20 |
taagtcgcaatgaatgattggagcatcacactcttcatggagatacaagatccctctagcaatatccagtgctattcttactctctcattccaatctggg |
119 |
Q |
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| T |
47068765 |
taagtcgcaatgaatgattggagcatcacactcttcatggagatacaagatccctctagcaatatccagtgctattcttactctctcattccaatctggg |
47068666 |
T |
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| Q |
120 |
cgtctttgatcaccaaaaagaagctttccaagtgatccgttgctcatgtattcataaaccagaagcctttttgaaccctcaacacaaaaaccgagcaatc |
219 |
Q |
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| T |
47068665 |
cgtctttgatcaccaaaaagaagctttccaagtgatccgttgctcatgtattcataaaccagaagcctttttgaaccctcaacacaaaaaccaagcaatc |
47068566 |
T |
|
| Q |
220 |
taactaggttcctgtggtgggttttcccaatggatctcacttctgcttgaaattccttttcaccttcttccaccactttttctagtctctttactgcaat |
319 |
Q |
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| T |
47068565 |
taactaggttcctgtggtgggttttcccaatggatctcacttctgcttgaaattccttttcaccttcttccaccactttttctagtctcttcactgcaat |
47068466 |
T |
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| Q |
320 |
caatctcttacctttg |
335 |
Q |
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| T |
47068465 |
caatctcttacctttg |
47068450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 27 - 335
Target Start/End: Original strand, 47075572 - 47075880
Alignment:
| Q |
27 |
caatgaatgattggagcatcacactcttcatggagatacaagatccctctagcaatatccagtgctattcttactctctcattccaatctgggcgtcttt |
126 |
Q |
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|||||||||||||| || ||||| ||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||| ||||||||| ||||||| |
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| T |
47075572 |
caatgaatgattggtgcctcacattcttcatggagatacgagatccctctagcaatgtccagtgccattcttactctctcatcccaatctggacgtcttt |
47075671 |
T |
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| Q |
127 |
gatcaccaaaaagaagctttccaagtgatccgttgctcatgtattcataaaccagaagcctttttgaaccctcaacacaaaaaccgagcaatctaactag |
226 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
47075672 |
gatcaccaaacagaagcttttcaagtgatccgttgctcatgtattcataaaccaaaagcctttttgaaccctcatgacaaaaacccagcaatctaactag |
47075771 |
T |
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| Q |
227 |
gttcctgtggtgggttttcccaatggatctcacttctgcttgaaattccttttcaccttcttccaccactttttctagtctctttactgcaatcaatctc |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||| || ||||||||||| ||||||||||||||| |
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| T |
47075772 |
gttcctgtggtgggttttcccaatggatctcacttctgcttgaaattccctttccccatcttccaccaccttctctagtctcttcactgcaatcaatctc |
47075871 |
T |
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| Q |
327 |
ttacctttg |
335 |
Q |
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||||||||| |
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| T |
47075872 |
ttacctttg |
47075880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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