View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19330_high_12 (Length: 372)
Name: NF19330_high_12
Description: NF19330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19330_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 8 - 354
Target Start/End: Original strand, 11653869 - 11654214
Alignment:
| Q |
8 |
agaagaaaagagaacattttgagaactctagccaattgttgttatgatagattctcttcatgcctataaaaggcaatgatcttggcaagttattcaaact |
107 |
Q |
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| T |
11653869 |
agaagaaaagagaacattttgagaactctagccaattgttgtcatgatagattctcttcatgcctataaaaggcaatgctcttggcaagttattcaaact |
11653968 |
T |
|
| Q |
108 |
catcaaa-caaataactatttgaatctaagaagagctagaaaatactttcaatggctcaaataatggttcaagttttggtgtcaatcttgcttgtactag |
206 |
Q |
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||| ||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11653969 |
cattaaaacaaataactatttgaatctaa--agagctagataatactttcaatggctcaaataatggttcaagttttggtgtcaatcttgcttgtgctag |
11654066 |
T |
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| Q |
207 |
tggcagtggaagcagctactcctcctggaattgctaaagatcatgaatatggccatgcaagctgcaagataaagaaatacaaacattgctataatttggt |
306 |
Q |
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| T |
11654067 |
tggcagtggaagcagctactcctcctggaattgctaaagatcatgaatatggccatgcaagctgcaagataaagaaatacaaacattgctataatttggt |
11654166 |
T |
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| Q |
307 |
tcatgtatgccctaagttttgccctaatgattgtactgtggagtgtgc |
354 |
Q |
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| T |
11654167 |
tcatgtatgccctaagttttgccctaatgattgtactgtggagtgtgc |
11654214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 51 - 354
Target Start/End: Original strand, 11667675 - 11667979
Alignment:
| Q |
51 |
atgatagattctcttcatgcctataaaaggcaatgatcttggcaagttattcaaactcatcaaacaaataactatttgaatctaagaagagctagaaaat |
150 |
Q |
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| T |
11667675 |
atgatagattctcttcatgcctataaaaggcaatgctcttggcaagttattcaaactcatcaaaaaaataactatttcaatctaa--agagctagataat |
11667772 |
T |
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| Q |
151 |
actttcaat---ggctcaaataatggttcaagttttggtgtcaatcttgcttgtactagtggcagtggaagcagctactcctcctggaattgctaaagat |
247 |
Q |
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| T |
11667773 |
actttcaataatggctcaaataatggttcaagttttggtgtcaatcttgcttgtgctagtggcagtggaagcagctactcctcctggaattgctaaagat |
11667872 |
T |
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| Q |
248 |
catgaatatggccatgcaagctgcaagataaagaaatacaaacattgctataatttggttcatgtatgccctaagttttgccctaatgattgtactgtgg |
347 |
Q |
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| T |
11667873 |
catgagtatggccatgcaagctgtaagataaagaaatacaaacattgctataatttggttcatgtatgccctaagttttgccctaatgattgtactgtgg |
11667972 |
T |
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| Q |
348 |
agtgtgc |
354 |
Q |
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||||||| |
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| T |
11667973 |
agtgtgc |
11667979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 142 - 355
Target Start/End: Complemental strand, 7345088 - 7344872
Alignment:
| Q |
142 |
ctagaaaatactttcaatggctcaaataatggttcaagttttggtgtcaatcttgct---tgtactagtggcagtggaagcagctactcctcctggaatt |
238 |
Q |
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| T |
7345088 |
ctagaaaatattttcaatggctaaattaatggttcaaactttggtgtcaataattctccttgtgctagtggcagtggaagcagctactcctcctggaatt |
7344989 |
T |
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| Q |
239 |
gctaaagatcatgaatatggccatgcaagctgcaagataaagaaatacaaacattgctataatttggttcatgtatgccctaagttttgccctaatgatt |
338 |
Q |
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|||||||||| ||| |||| |||||||||||||||||||||| |||||||||||||||||| ||||||||| ||| ||||||| ||| ||| |||||| |
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| T |
7344988 |
gctaaagatcgtgagcatggttatgcaagctgcaagataaagaagtacaaacattgctataatatggttcatgcatgtcctaagtcttgtccttatgatt |
7344889 |
T |
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| Q |
339 |
gtactgtggagtgtgct |
355 |
Q |
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| T |
7344888 |
gcactgtggagtgtgct |
7344872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 142 - 354
Target Start/End: Original strand, 11663382 - 11663594
Alignment:
| Q |
142 |
ctagaaaatactttcaatggctcaaataatggttcaagttttggtgtcaatcttgcttgtactagtggcagtggaagcagctactcctcctggaattgct |
241 |
Q |
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||||||||| ||||||||||| ||||| | |||||| ||||||||||||| |||||||| ||| |||||||||||||||||| ||||||||||| |||| |
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| T |
11663382 |
ctagaaaattatttcaatggctaaaatattagttcaaattttggtgtcaattttgcttgtgctaatggcagtggaagcagctagtcctcctggaaatgct |
11663481 |
T |
|
| Q |
242 |
aaagatcatgaatatggccatgcaagctgcaagataaagaaatacaaacattgctataatttggttcatgtatgccctaagttttgccctaatgattgta |
341 |
Q |
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| T |
11663482 |
aaaggtcgtgggaatggttatgcaacctgcaagataaagaagtacaaacattgctataattcggttcatgtatgtcctaagtcttgtccttatgattgta |
11663581 |
T |
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| Q |
342 |
ctgtggagtgtgc |
354 |
Q |
| |
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||||||||||||| |
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| T |
11663582 |
ctgtggagtgtgc |
11663594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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