View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19330_high_18 (Length: 268)
Name: NF19330_high_18
Description: NF19330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19330_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 6498969 - 6498722
Alignment:
| Q |
1 |
caatagaattcggctccgccgtagaggcctcaatccaagctcgggctagagaccaaagagccctgaaactattgcaagaaagtaagaaatgtctaattga |
100 |
Q |
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| T |
6498969 |
caatagaattcggctccgccgtagaggcctcaatccaagctcaggctagagatcaaagagccctgaaattattgtaagaaaggaagaaatgtctaact-a |
6498871 |
T |
|
| Q |
101 |
ttcgacatcaccacaactgcagattgagtagtttgannnnnnnatcatcccgcatcctttggaacataatttacttgttgtatagattaaatgttgaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6498870 |
ttcgacatcaccacaactgcagattgagtagtttgatttttttataatcccgcatcctttgaaacataatttacttgttgtatagattaaatgttgaatc |
6498771 |
T |
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| Q |
201 |
acaagtggagctcaggggatcaccctcattgatccaagagcaaccacat |
249 |
Q |
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| T |
6498770 |
acaagtggagctcaggggatcaccctcattggtccaagagcaaccacat |
6498722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 22403633 - 22403710
Alignment:
| Q |
2 |
aatagaattcggctccgccgtagaggcctcaatccaagctcgggctagagaccaaagagccctgaaactattgcaaga |
79 |
Q |
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|||| ||||||||||||| |||||| | |||||||||||||| ||| |||| | ||||||||||||| | ||||||| |
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| T |
22403633 |
aatacaattcggctccgctgtagagactccaatccaagctcggactaaagactatagagccctgaaacaaatgcaaga |
22403710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 2 - 116
Target Start/End: Original strand, 45085200 - 45085314
Alignment:
| Q |
2 |
aatagaattcggctccgccgtagaggcctcaatccaagctcgggctagagaccaaagagccctgaaactattgcaagaaagtaagaaatgtctaattgat |
101 |
Q |
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||||||||| ||||| ||||||||| || |||||||||||||| |||||||||||||||||||||| | ||||||||| || || |||||||||| |||| |
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| T |
45085200 |
aatagaatttggctctgccgtagagaccccaatccaagctcggactagagaccaaagagccctgaatcaattgcaagagaggaacaaatgtctaactgat |
45085299 |
T |
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| Q |
102 |
tcgacatcaccacaa |
116 |
Q |
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|| || || |||||| |
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| T |
45085300 |
tcaacgtctccacaa |
45085314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 37943133 - 37943066
Alignment:
| Q |
1 |
caatagaattcggctccgccgtagaggcctcaatccaagctcgggctagagaccaaagagccctgaaac |
69 |
Q |
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||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||| |||| |
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| T |
37943133 |
caatagaattcggctccgccgtagaaacc-caatccaagctcggactagagaccaaagagccctaaaac |
37943066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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