View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19330_high_2 (Length: 502)
Name: NF19330_high_2
Description: NF19330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19330_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 7 - 484
Target Start/End: Complemental strand, 46186204 - 46185727
Alignment:
| Q |
7 |
attttaactactcgatcaaaacttgaggagcatgcttcatttgtttataaaagaaacattttctgcaaatttcaagaagagcttgcacagatcaacaatt |
106 |
Q |
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| T |
46186204 |
attttaactactggatcaaaacttgaagagcatgcttcatttgtttataaaagaaaaattttctgcaaatttcaagaagagcttgcacggatcaacaatt |
46186105 |
T |
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| Q |
107 |
tcactaaaattagaagattcaaagagaaggaccgagatatgagtatgaagtgtctaatggctacaaccctaaagataccttcattgtacatgtagattta |
206 |
Q |
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| T |
46186104 |
tcactaaaattagaagattcaaagagaaggaccgagatatgagtatgaagtgtctaatggctacaacccaaaagataccttcattgtccatgtagattta |
46186005 |
T |
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| Q |
207 |
ggccaggagttgctaaatgtggctgccactatatgaattcatgggatttttcaatcaaaaggtattgtgcaaatccctgatcatttcattctgcaacatt |
306 |
Q |
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| T |
46186004 |
ggccaaaagttgctaaatgtggctgccactatatgaattcatgggatttttcaatcaaaaggtattgtgcaaatccctgatcatttcattctgcaacatt |
46185905 |
T |
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| Q |
307 |
ggaccaaggatgctacgtaccaaaagattttaagaagggtgcatgcacaacaaaaagcaagttcattagttgatcttgctgaagaatcagggaatttata |
406 |
Q |
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| T |
46185904 |
ggaccaaggatgctacgtaccaaaagattttaagaagggtgcatgcacaacaaaaagcaagttcattagttgatcttgctgaagaatcagagaatttata |
46185805 |
T |
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| Q |
407 |
caagttcattattctagaatttggtaaccttcgtgtttcggctatgaaaatgaaagcaaatttatcatttgatgatag |
484 |
Q |
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| T |
46185804 |
caagttcattattctagaatttggtaaccttcgtgtttcggctatgaaaatgaaagcaaatttatcatttgatgatag |
46185727 |
T |
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