View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19330_high_21 (Length: 254)
Name: NF19330_high_21
Description: NF19330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19330_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 35293752 - 35294002
Alignment:
| Q |
1 |
tcacaaataacacaacaacctaatttctaacttgcatactattttatcctcctatttcccacttctatcaagaagggtagaggcaaaggcaattc----- |
95 |
Q |
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| T |
35293752 |
tcacaaataacacaacaacctaatttctaacttgcatactattttatcctcctatttcccacttctatcaagaagggtagaggcaaaggcaattctctat |
35293851 |
T |
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| Q |
96 |
---------tctattctctctacatttcaaacaaacaaaaaagtttcattaccttacccatattatctaaaatgttaaacttcaagtcatggattatgtt |
186 |
Q |
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| T |
35293852 |
tctctattctctattctctctacatttcaaacaaacaaaaaagtttcattaccttacccatattatctaaaatgttaaacatcaagtcatggattatgtt |
35293951 |
T |
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| Q |
187 |
cttctttctagccatgctcattgccatggtatctgctgaagcttctaaggt |
237 |
Q |
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| T |
35293952 |
cttctttctagccatgctcattgccatggtatctgctgaagcttctaaggt |
35294002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 103 - 234
Target Start/End: Complemental strand, 20717197 - 20717066
Alignment:
| Q |
103 |
tctctacatttcaaacaaacaaaaaagtttcattaccttacccatattatctaaaatgttaaacttcaagtcatggattatgttcttctttctagccatg |
202 |
Q |
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|||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||| |
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| T |
20717197 |
tctctacatttcaaacaaacaacaaagtctcaataccttacccatattatctaaaatgataaacttcaagccatggcttatgttcttcttcctagccatg |
20717098 |
T |
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| Q |
203 |
ctcattgccatggtatctgctgaagcttctaa |
234 |
Q |
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| T |
20717097 |
gtcatcgccatggtatctgctaaagcttctaa |
20717066 |
T |
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