View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19330_high_23 (Length: 244)
Name: NF19330_high_23
Description: NF19330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19330_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 35024667 - 35024454
Alignment:
| Q |
8 |
atcctttggaagagttagtgcggaggggagaggaataagagaactcgtaatggtttaaggcttatttggcacactacgatttgggtgctatggaaagcta |
107 |
Q |
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| T |
35024667 |
atcctttgggagtgttggttcggaggggagaggaataagagaactcgtaacgaattaaggcttatttggcatattacgatttgggtgttatggaaagcta |
35024568 |
T |
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| Q |
108 |
gaaatgatcgagtctttaataatcttattacggaggtggtcgagattgtggatgagataaaggtgttatcgtggagttggtctttggatcgtatccccat |
207 |
Q |
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| T |
35024567 |
ggaataatcgagtatttaataatcaaattacggaggtgggcgagattgtggatgagataaaggtgttatcgtggcgttggtctttggatcgtatccttat |
35024468 |
T |
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| Q |
208 |
gtcgccgtgtttgt |
221 |
Q |
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|||||||||||||| |
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| T |
35024467 |
gtcgccgtgtttgt |
35024454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 30656386 - 30656342
Alignment:
| Q |
71 |
atttggcacactacgatttgggtgctatggaaagctagaaatgat |
115 |
Q |
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| T |
30656386 |
atttggcacactacgatttgggtcttgtggaaagcgagaaatgat |
30656342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 34774788 - 34774575
Alignment:
| Q |
8 |
atcctttggaagagttagtgcggaggggagaggaataagagaactcgtaatggtttaaggcttatttggcacactacgatttgggtgctatggaaagcta |
107 |
Q |
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| T |
34774788 |
atcctttgggagtgttggtgcggaggggagaggaataagagaactcgtaacggattaaggcttatttggcatactacgatttgggtgttatggaaagcta |
34774689 |
T |
|
| Q |
108 |
gaaatgatcgagtctttaataatcttattacggaggtggtcgagattgtggatgagataaaggtgttatcgtggagttggtctttggatcgtatccccat |
207 |
Q |
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| ||| ||||||| |||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
34774688 |
ggaataatcgagtatttaataatcaaattacataggtgggcgagattgtggatgagataaaggtgttatcgtggcgttggtctttggatcgtatccatat |
34774589 |
T |
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| Q |
208 |
gtcgccgtgtttgt |
221 |
Q |
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||||||||||||| |
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| T |
34774588 |
atcgccgtgtttgt |
34774575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 27 - 221
Target Start/End: Complemental strand, 42748955 - 42748761
Alignment:
| Q |
27 |
gcggaggggagaggaataagagaactcgtaatggtttaaggcttatttggcacactacgatttgggtgctatggaaagctagaaatgatcgagtctttaa |
126 |
Q |
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|||||||||||||||||||||||||||||| || ||||||||||||||||| || |||||||||||| ||||||||||||| ||| ||||||| ||||| |
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| T |
42748955 |
gcggaggggagaggaataagagaactcgtagcggattaaggcttatttggcataccacgatttgggtgttatggaaagctaggaataatcgagtatttaa |
42748856 |
T |
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| Q |
127 |
taatcttattacggaggtggtcgagattgtggatgagataaaggtgttatcgtggagttggtctttggatcgtatccccatgtcgccgtgtttgt |
221 |
Q |
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||||| ||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||| | || ||||||||||||| |
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| T |
42748855 |
taatcgaattacggaggtgggcgagattgtggatgagataaaggtgatatcgtggcgttggtctttggatcgtattcttatatcgccgtgtttgt |
42748761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 38553102 - 38553146
Alignment:
| Q |
71 |
atttggcacactacgatttgggtgctatggaaagctagaaatgat |
115 |
Q |
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|||||||||||||||||||||||| | ||||||||||| |||||| |
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| T |
38553102 |
atttggcacactacgatttgggtgttgtggaaagctaggaatgat |
38553146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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