View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19330_high_6 (Length: 444)
Name: NF19330_high_6
Description: NF19330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19330_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 23 - 441
Target Start/End: Original strand, 40114896 - 40115314
Alignment:
| Q |
23 |
tggaggacaaataagattttagttttatgaattctcctccattatctgagtaaagggaagtaatagggaagttaaaatgtttctcaacaacatttttaaa |
122 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40114896 |
tggaggacaaataagattttagttttatgaattctcctccattatctgagtaaagggaagtaatagagaagttaaaatgtttctcaacaacatttttaaa |
40114995 |
T |
|
| Q |
123 |
ttgaggaaatatagtggagacatcagatttatttttcataggaaaaagccaaatatattttgagaaatgatcaacaaatattagatagtataagaaacca |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40114996 |
ttgaggaaatatagtggagacatcagatttatttttcatgggaaaaagccaaatatattttgagaaatgatcaacaaatattagatagtataagaaacca |
40115095 |
T |
|
| Q |
223 |
tctaaggacctaacaggggctggtccccatacatcagagtaaataatctcaagaggcctagagctggtaatacttgaaatagtgaatggaagcttatgac |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40115096 |
tctaaggacctaacaggggctggtccccatacatcagagtaaataatctcaagaggcctagagctggtaatacttgaaatagtgaatggcagcttatgac |
40115195 |
T |
|
| Q |
323 |
tttttgaggtattacaagcgatgcatggtgtgttgagactatgttttatttgcagaagggaaaatagatgtctcatggtgcgattacacggatgtcctaa |
422 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40115196 |
tttttgaggtattacaagcgatgcatggtgtgttgagactatgttttatttgcagaagggaaaatagatgtctcatggtgcgattacacggatgtcctaa |
40115295 |
T |
|
| Q |
423 |
aatatgatgccaaggtgga |
441 |
Q |
| |
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||||||||||||||||||| |
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| T |
40115296 |
aatatgatgccaaggtgga |
40115314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 139 - 268
Target Start/End: Original strand, 9006838 - 9006967
Alignment:
| Q |
139 |
gagacatcagatttatttttcataggaaaaagccaaatatattttgagaaatgatcaacaaatattagatagtataagaaaccatctaaggacctaacag |
238 |
Q |
| |
|
||||||||||||||||||||||| ||| | | || ||||||||| ||||||||||| |||||||||| || |||||| | |||||||||||||||| || |
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| T |
9006838 |
gagacatcagatttatttttcattggatataacccaatatatttggagaaatgatctacaaatattaagtaatataagtagccatctaaggacctaatag |
9006937 |
T |
|
| Q |
239 |
gggctggtccccatacatcagagtaaataa |
268 |
Q |
| |
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| || || |||||||||||| |||||||| |
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| T |
9006938 |
gagcagggccccatacatcactgtaaataa |
9006967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 373
Target Start/End: Original strand, 42360619 - 42360811
Alignment:
| Q |
178 |
tattttgagaaatgatcaacaaatattagatagtataagaaaccatctaaggacctaacaggggctggtccccatacatcagagtaaataatctcaagag |
277 |
Q |
| |
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|||||||| ||||||| ||||| ||||||||||| ||| | |||||||| ||||||| || ||| ||||||||||| || |||||| ||| ||||| |
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| T |
42360619 |
tattttgaataatgatcgacaaagattagatagtacaagtagccatctaacgacctaatgggagct---ccccatacatccgaataaatattcttaagag |
42360715 |
T |
|
| Q |
278 |
gcctagagctggtaatacttgaaatagtgaatgga-agcttatgactttttgaggtattacaagcgatgcatggtgtgttgagactatgttttattt |
373 |
Q |
| |
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| |||| ||| ||||| ||| ||| |||||| | ||||||||||||||||||||||||| ||||||||| ||||||| || |||||||||| |
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|
| T |
42360716 |
gtctagtgctctctatactagaagaagt-aatggacaatttatgactttttgaggtattacaagagatgcatggagtgttgataccgtgttttattt |
42360811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 37 - 330
Target Start/End: Original strand, 656044 - 656335
Alignment:
| Q |
37 |
gattttagttttatgaattctcctccattatctgagtaaagggaagtaatagggaagttaaaatgtttctcaacaacatttttaaattgaggaaatatag |
136 |
Q |
| |
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||||||||||| ||| |||| || ||||| || || || || ||| | ||||| || ||||||| ||| | ||||||| |||| |||| |||||| ||| |
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| T |
656044 |
gattttagtttgatgtattccccaccattgtcagaatatagagaaatgataggcaaattaaaatattttttaacaacacttttgaatttaggaaaaataa |
656143 |
T |
|
| Q |
137 |
tggagacatcagatttatttttcataggaaaaagccaaatatattttgagaaatgatcaacaaatattagatagtataagaaaccatctaaggacctaac |
236 |
Q |
| |
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| |||||||| ||||||||||||| ||| | | |||||||||||| | |||||||||||||| ||||||||||||||| |||||||||| ||||||| |
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|
| T |
656144 |
tagagacatctgatttatttttcaatggatataaccaaatatatttcaaaaaatgatcaacaaaaattagatagtataagtaaccatctaatgacctaat |
656243 |
T |
|
| Q |
237 |
aggggctggtccccatacatcagagtaaataatctcaagaggcctagagctggtaatacttgaaatagtgaatggaagcttatgactttttgag |
330 |
Q |
| |
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||| ||||| |||||||||| ||||||||||||||||| ||||||| ||| |||||||||| |||||||| || | | |||||||||||||| |
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| T |
656244 |
aggagctgg--cccatacatctgagtaaataatctcaagcggcctagtgctcttaatacttgatatagtgaacggcaacctatgactttttgag |
656335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 28 - 373
Target Start/End: Complemental strand, 3017731 - 3017389
Alignment:
| Q |
28 |
gacaaataagattttagttttatgaattctcctccattatctgagtaaagggaagtaatagggaagttaaaatgtttctcaacaacatttttaaattgag |
127 |
Q |
| |
|
|||||| ||||| ||||||| ||| | ||||| ||||| || || || || ||| ||| || |||||||||| ||| ||||||| | ||| ||||||| |
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|
| T |
3017731 |
gacaaaaaagatcttagtttaatgtactctccaccattgtcagaatatagagaaacaattggtaagttaaaatatttttcaacaagttatttgaattgag |
3017632 |
T |
|
| Q |
128 |
gaaatatagtggagacatcagatttatttttcataggaaaaagccaaatatattttgagaaatgatcaacaaatattagatagtataagaaaccatctaa |
227 |
Q |
| |
|
|||| | | ||||||||||| || |||||||| ||| | | ||| | |||||||| ||||||||||||| ||||||||||| ||| | |||||||| |
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|
| T |
3017631 |
gaaaaagtgatgagacatcagacttgtttttcatgggatataaccatttgtattttgaataatgatcaacaaagattagatagtacaagtagccatctaa |
3017532 |
T |
|
| Q |
228 |
ggacctaacaggggctggtccccatacatcagagtaaataatctcaagaggcctagagctggtaatacttgaaatagtgaatggaagcttatgacttttt |
327 |
Q |
| |
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||||||| || || |||||||||||||| || |||||| ||||||||||||||| ||| ||||| || ||| || || | |||||||||||| |
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| T |
3017531 |
cgacctaatgggagcaggtccccatacatccgaataaatattctcaagaggcctagtgctctctatactaga---agtaaagggcaatttatgacttttt |
3017435 |
T |
|
| Q |
328 |
gaggtattacaagcgatgcatggtgtgttgagactatgttttattt |
373 |
Q |
| |
|
||||||||||||| ||||||||| |||||| || |||||||||| |
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|
| T |
3017434 |
gaggtattacaagagatgcatggattgttgataccgtgttttattt |
3017389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 140 - 278
Target Start/End: Original strand, 23971201 - 23971339
Alignment:
| Q |
140 |
agacatcagatttatttttcataggaaaaagccaaatatattttgagaaatgatcaacaaatattagatagtataagaaaccatctaaggacctaacagg |
239 |
Q |
| |
|
|||||||||| ||| |||||| ||| |||||||||| ||||| || |||||||||| ||| |||| ||| || | |||||||||||| ||||||| ||| |
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| T |
23971201 |
agacatcagacttaaatttcattggataaagccaaatgtatttggaaaaatgatcaataaaaattacataataaacgaaaccatctaaagacctaatagg |
23971300 |
T |
|
| Q |
240 |
ggctggtccccatacatcagagtaaataatctcaagagg |
278 |
Q |
| |
|
| || ||||| ||||| || ||||| | ||||||||| |
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|
| T |
23971301 |
agtagggccccagacatccgaataaatcaactcaagagg |
23971339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 140 - 278
Target Start/End: Original strand, 18187960 - 18188098
Alignment:
| Q |
140 |
agacatcagatttatttttcataggaaaaagccaaatatattttgagaaatgatcaacaaatattagatagtataagaaaccatctaaggacctaacagg |
239 |
Q |
| |
|
|||||||||| ||| |||||| ||| |||||||||| ||||| ||||||||||||| ||| |||| ||| || | |||||||||||| ||||||| ||| |
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|
| T |
18187960 |
agacatcagacttaaatttcattggataaagccaaatgtatttggagaaatgatcaataaaaattacataataaacgaaaccatctaaagacctaatagg |
18188059 |
T |
|
| Q |
240 |
ggctggtccccatacatcagagtaaataatctcaagagg |
278 |
Q |
| |
|
|| || ||| | ||||| || ||||| | ||||||||| |
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|
| T |
18188060 |
agcagggccctagacatccgaataaatcaactcaagagg |
18188098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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