View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19330_low_10 (Length: 399)

Name: NF19330_low_10
Description: NF19330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19330_low_10
NF19330_low_10
[»] chr1 (16 HSPs)
chr1 (10-381)||(51848977-51849348)
chr1 (294-383)||(24136809-24136898)
chr1 (310-379)||(18540960-18541029)
chr1 (309-383)||(32811768-32811842)
chr1 (293-383)||(11570251-11570341)
chr1 (309-381)||(44671940-44672012)
chr1 (317-383)||(1788255-1788321)
chr1 (310-381)||(10302248-10302319)
chr1 (294-381)||(12708191-12708278)
chr1 (294-381)||(12717736-12717823)
chr1 (331-381)||(42615952-42616002)
chr1 (332-381)||(21728161-21728210)
chr1 (294-381)||(8670167-8670254)
chr1 (309-383)||(950349-950423)
chr1 (323-383)||(29632525-29632585)
chr1 (310-370)||(51339605-51339665)
[»] chr4 (18 HSPs)
chr4 (290-383)||(53356962-53357055)
chr4 (295-381)||(51540737-51540823)
chr4 (310-381)||(40756016-40756087)
chr4 (290-381)||(39880915-39881006)
chr4 (309-381)||(25725598-25725670)
chr4 (293-381)||(29406925-29407013)
chr4 (290-381)||(12241153-12241243)
chr4 (293-379)||(4489687-4489773)
chr4 (293-382)||(43759068-43759157)
chr4 (294-383)||(55996513-55996602)
chr4 (310-381)||(1562441-1562512)
chr4 (293-381)||(30890173-30890261)
chr4 (334-381)||(3968980-3969027)
chr4 (254-287)||(42132707-42132740)
chr4 (333-370)||(56025362-56025399)
chr4 (323-383)||(6239457-6239517)
chr4 (317-381)||(16508889-16508953)
chr4 (321-381)||(33820253-33820312)
[»] chr8 (12 HSPs)
chr8 (294-383)||(35819030-35819119)
chr8 (294-381)||(40719533-40719620)
chr8 (294-381)||(30608599-30608686)
chr8 (291-381)||(39153570-39153660)
chr8 (294-381)||(16808676-16808763)
chr8 (293-373)||(31806402-31806482)
chr8 (294-381)||(9550312-9550399)
chr8 (292-380)||(9048203-9048291)
chr8 (293-381)||(34996248-34996336)
chr8 (294-373)||(34494527-34494606)
chr8 (310-381)||(44380519-44380590)
chr8 (333-381)||(30943767-30943815)
[»] chr7 (10 HSPs)
chr7 (292-381)||(21153147-21153236)
chr7 (293-382)||(36920879-36920968)
chr7 (294-381)||(33212121-33212208)
chr7 (309-381)||(42640938-42641010)
chr7 (293-383)||(6822423-6822513)
chr7 (290-381)||(44596029-44596120)
chr7 (300-380)||(27075564-27075644)
chr7 (300-380)||(27202667-27202747)
chr7 (293-383)||(27330915-27331005)
chr7 (331-381)||(42276187-42276237)
[»] chr2 (11 HSPs)
chr2 (294-383)||(44059494-44059583)
chr2 (310-381)||(31635715-31635786)
chr2 (310-383)||(11980742-11980815)
chr2 (292-381)||(16051276-16051364)
chr2 (309-381)||(41868273-41868345)
chr2 (293-372)||(4723670-4723749)
chr2 (290-370)||(29192534-29192614)
chr2 (323-381)||(13465993-13466051)
chr2 (295-381)||(17917484-17917570)
chr2 (316-381)||(1151624-1151689)
chr2 (332-381)||(43057590-43057639)
[»] chr3 (14 HSPs)
chr3 (289-381)||(40159710-40159802)
chr3 (294-383)||(31017286-31017374)
chr3 (294-381)||(11335191-11335278)
chr3 (282-381)||(47988362-47988461)
chr3 (282-381)||(47997649-47997748)
chr3 (282-381)||(48006936-48007035)
chr3 (293-379)||(50745457-50745543)
chr3 (293-383)||(51032514-51032604)
chr3 (295-382)||(41369673-41369760)
chr3 (332-381)||(13724337-13724386)
chr3 (293-381)||(22153959-22154047)
chr3 (345-381)||(39350509-39350545)
chr3 (317-370)||(32795942-32795995)
chr3 (333-370)||(41877794-41877831)
[»] chr6 (6 HSPs)
chr6 (293-379)||(15098835-15098921)
chr6 (291-380)||(26391169-26391258)
chr6 (309-373)||(27102202-27102267)
chr6 (309-373)||(27144024-27144089)
chr6 (312-372)||(8778779-8778839)
chr6 (332-381)||(28883673-28883722)
[»] chr5 (7 HSPs)
chr5 (294-381)||(36415951-36416038)
chr5 (284-381)||(285321-285418)
chr5 (295-383)||(32425045-32425133)
chr5 (292-383)||(20125483-20125574)
chr5 (295-381)||(15290911-15290997)
chr5 (293-381)||(18638729-18638817)
chr5 (333-373)||(7077267-7077307)
[»] scaffold0001 (1 HSPs)
scaffold0001 (296-381)||(404843-404928)


Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 10 - 381
Target Start/End: Complemental strand, 51849348 - 51848977
Alignment:
Q  10 attattctgcggagcttagattataatcatgatgannnnnnnatgttataataatgtgacctggtctaataatgtaagcttgaactaacgtgaactgcta 109  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  51849348 attattctgcggagcttagattataatcatgatgatttttttatgttataataatgtgacctggtctaatattgtaagcttgaactaacgtgaactgcta 51849249  T
Q  110 ccacaagacagagtaccgaatagttgtctggaatttgaaatgttttggattttgtaaccgagagccgccaggtgcaccaaaaggtatcacatcacaatag 209  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51849248 ccacaagacagagtaccgaatagttttctggaatttgaaatgttttggattttgtaaccgagagccgccaggtgcaccaaaaggtatcacatcacaatag 51849149  T
Q  210 tttataaacacttgttacccccaactcactaacctatcttttaactactccctacctctcataataactgagtcattttcaatagagtagtgatgtatat 309  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  51849148 tttataaacacttgttaccctcaactcactaacctatcttttaactactccctacgtctcataataactgagtcatttttaatagagtagtgatgtatat 51849049  T
Q  310 acaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51849048 acaactctttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 51848977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 383
Target Start/End: Original strand, 24136809 - 24136898
Alignment:
Q  294 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagagaaa 383  Q
    |||||||||| | ||||||||||||| ||||||  | |||||||| |||| |||||||||||||||||||| |||||||| |||||||||    
T  24136809 gagtagtgatatttatacaactttttagtacaatttttatgacaaatttgtttttctcttatttgattggtaaaaaataatagagagaaa 24136898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 310 - 379
Target Start/End: Original strand, 18540960 - 18541029
Alignment:
Q  310 acaactttttggtacaacctctatg-acaactttgattttctcttatttgattggtcaaaaataacagaga 379  Q
    |||||||||||||||||| ||| || ||||||||||||||||||| ||||||||||||||||||| |||||    
T  18540960 acaactttttggtacaac-tctttggacaactttgattttctcttctttgattggtcaaaaataatagaga 18541029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 309 - 383
Target Start/End: Original strand, 32811768 - 32811842
Alignment:
Q  309 tacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagagaaa 383  Q
    ||||||| ||| ||||||| |  |||||||||||| |||||||| |||||||||||||||||||| |||||||||    
T  32811768 tacaactctttagtacaactttaatgacaactttggttttctctcatttgattggtcaaaaataatagagagaaa 32811842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 293 - 383
Target Start/End: Original strand, 11570251 - 11570341
Alignment:
Q  293 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagagaaa 383  Q
    ||||||||||| ||| ||||||| ||| ||||||| |  |||||||||||  | ||||||  ||||||||||||||||||| |||||||||    
T  11570251 agagtagtgatatatgtacaactctttcgtacaactttcatgacaacttttgtcttctctcttttgattggtcaaaaataatagagagaaa 11570341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 309 - 381
Target Start/End: Original strand, 44671940 - 44672012
Alignment:
Q  309 tacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    ||||||| || |||||||| | ||||| ||||||  ||||||||| ||||||||||||||||||| |||||||    
T  44671940 tacaactcttcggtacaacttttatgataactttagttttctcttctttgattggtcaaaaataatagagaga 44672012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 383
Target Start/End: Original strand, 1788255 - 1788321
Alignment:
Q  317 tttggtacaacctctat-gacaactttgattttctcttatttgattggtcaaaaataacagagagaaa 383  Q
    ||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||| ||| |||||    
T  1788255 tttggtacaac-tctattgacaattttgattttctcttctttgattggtcaaaaataatagaaagaaa 1788321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 381
Target Start/End: Original strand, 10302248 - 10302319
Alignment:
Q  310 acaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    |||||| ||||||||||| |  |||| ||||||||||||||||  |||||||||| |||||||| |||||||    
T  10302248 acaactctttggtacaactttcatgataactttgattttctctcttttgattggtaaaaaataatagagaga 10302319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 381
Target Start/End: Complemental strand, 12708278 - 12708191
Alignment:
Q  294 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    |||||||||| | | ||||||| ||| ||||||||| |||||||| |||| |||| | |  ||||||||||||||||||| |||||||    
T  12708278 gagtagtgatatttgtacaactcttttgtacaacctttatgacaattttgtttttatatcttttgattggtcaaaaataatagagaga 12708191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 381
Target Start/End: Complemental strand, 12717823 - 12717736
Alignment:
Q  294 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    |||||||||| | | ||||||| ||| ||||||||| |||||||| |||| |||| | |  ||||||||||||||||||| |||||||    
T  12717823 gagtagtgatatttgtacaactcttttgtacaacctttatgacaattttgtttttatatcttttgattggtcaaaaataatagagaga 12717736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 42616002 - 42615952
Alignment:
Q  331 tatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    ||||||||||||| |||||| || ||||||||||||||||||| |||||||    
T  42616002 tatgacaactttgtttttctattttttgattggtcaaaaataatagagaga 42615952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 21728161 - 21728210
Alignment:
Q  332 atgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    ||||||||||||||||| |||  ||||||||||||||||||| |||||||    
T  21728161 atgacaactttgattttatctcttttgattggtcaaaaataatagagaga 21728210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 381
Target Start/End: Complemental strand, 8670254 - 8670167
Alignment:
Q  294 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    |||||||||| | | ||||||| ||| |||| | || ||||| ||||||| |||||| |  ||||||||||||||||||| |||||||    
T  8670254 gagtagtgatatttgtacaactcttttgtacgatctttatgataactttgtttttctatcttttgattggtcaaaaataatagagaga 8670167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 383
Target Start/End: Original strand, 950349 - 950423
Alignment:
Q  309 tacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagagaaa 383  Q
    ||||||||||| | ||||| | |||| ||| |||| |||||| |  ||||||||||||||||||| |||||||||    
T  950349 tacaacttttttgaacaacttttatgccaattttgtttttctttcttttgattggtcaaaaataatagagagaaa 950423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 383
Target Start/End: Complemental strand, 29632585 - 29632525
Alignment:
Q  323 acaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagagaaa 383  Q
    ||||| |||||||||||||  |||||||||  ||| ||||||||||||||| |||| ||||    
T  29632585 acaacttctatgacaacttcaattttctctatttttattggtcaaaaataatagagcgaaa 29632525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 370
Target Start/End: Original strand, 51339605 - 51339665
Alignment:
Q  310 acaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaa 370  Q
    |||||| ||||||||||||| | ||||||| || |||||||||  ||| ||||||||||||    
T  51339605 acaactatttggtacaacctatttgacaaccttcattttctctcttttcattggtcaaaaa 51339665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 290 - 383
Target Start/End: Original strand, 53356962 - 53357055
Alignment:
Q  290 aatagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagagaaa 383  Q
    |||||||||||||| ||| ||||||| ||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||| |||||||||    
T  53356962 aatagagtagtgatatatgtacaactctttggtacaacttctatgacaactttgattgtctctcatttgattggtcaaaaataatagagagaaa 53357055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 295 - 381
Target Start/End: Original strand, 51540737 - 51540823
Alignment:
Q  295 agtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    ||||||||| ||||||||||| ||||||||||| | |||||||| |||| ||||||||  ||||||||||||||||||| |||||||    
T  51540737 agtagtgatatatatacaactctttggtacaacttttatgacaattttggttttctctcttttgattggtcaaaaataatagagaga 51540823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 381
Target Start/End: Complemental strand, 40756087 - 40756016
Alignment:
Q  310 acaactttttggtacaacctctatg-acaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    |||||||||||||||||| ||| || ||||||||||||||||||| ||||||||||||||||||| |||||||    
T  40756087 acaactttttggtacaac-tctttggacaactttgattttctcttctttgattggtcaaaaataatagagaga 40756016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 290 - 381
Target Start/End: Original strand, 39880915 - 39881006
Alignment:
Q  290 aatagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    ||||| |||||||| ||| ||||||| ||| ||||||| |  |||||||||||| ||||||||  ||||||||||||||||||| |||||||    
T  39880915 aatagcgtagtgatatatgtacaactctttcgtacaactttcatgacaactttggttttctctcttttgattggtcaaaaataatagagaga 39881006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 381
Target Start/End: Original strand, 25725598 - 25725670
Alignment:
Q  309 tacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    ||||||| ||| ||||||||| ||||||||||||| |||||| | ||||| |||||||||||||| |||||||    
T  25725598 tacaactcttttgtacaacctttatgacaactttgtttttctatcatttggttggtcaaaaataatagagaga 25725670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 293 - 381
Target Start/End: Original strand, 29406925 - 29407013
Alignment:
Q  293 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    ||||||||||| ||| ||||||| ||||||||||| |  ||||||| |||| ||||||||  |||||||||| |||||||| |||||||    
T  29406925 agagtagtgatatatgtacaactctttggtacaactttcatgacaattttggttttctctattttgattggtaaaaaataatagagaga 29407013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 381
Target Start/End: Complemental strand, 12241243 - 12241153
Alignment:
Q  290 aatagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    |||||||||||||| | | ||||||| ||| ||||||||| ||||||||||||  ||||||||  |||||||||| |||||||| |||||||    
T  12241243 aatagagtagtgatatttgtacaactcttttgtacaacctttatgacaactttatttttctctcttttgattggt-aaaaataatagagaga 12241153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 293 - 379
Target Start/End: Original strand, 4489687 - 4489773
Alignment:
Q  293 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagaga 379  Q
    ||||||||||| ||| ||||||| ||||||||||| |  ||||||||||| ||||||| |  |||| |||||||||||||| |||||    
T  4489687 agagtagtgatatatgtacaactctttggtacaactttcatgacaactttaattttctatcttttggttggtcaaaaataatagaga 4489773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 382
Target Start/End: Original strand, 43759068 - 43759157
Alignment:
Q  293 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagagaa 382  Q
    ||||||||||| | | ||||||| ||| ||||||||| ||||||||| ||| |||||| |  ||||||| ||||||||||| ||||||||    
T  43759068 agagtagtgatatttgtacaactcttttgtacaacctttatgacaaccttgtttttctatcttttgatttgtcaaaaataatagagagaa 43759157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 383
Target Start/End: Complemental strand, 55996602 - 55996513
Alignment:
Q  294 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagagaaa 383  Q
    |||||||||| ||| ||||||||||||||||||     ||||||||||  ||||||| |  ||||||||||||||||||| |||||||||    
T  55996602 gagtagtgatatatgtacaactttttggtacaattataatgacaacttcaattttctatcttttgattggtcaaaaataatagagagaaa 55996513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 310 - 381
Target Start/End: Original strand, 1562441 - 1562512
Alignment:
Q  310 acaactttttggtacaacctctat-gacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    |||||||||||||||||  ||| | |||||||||| ||||||||| ||||||||||||||||||| |||||||    
T  1562441 acaactttttggtacaa-ttctttggacaactttggttttctcttttttgattggtcaaaaataatagagaga 1562512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 293 - 381
Target Start/End: Original strand, 30890173 - 30890261
Alignment:
Q  293 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    |||| |||||| ||| ||||||| ||||||||||  | ||||||||||||| ||||||||  ||||| ||||||| ||||| |||||||    
T  30890173 agagcagtgatatatgtacaactctttggtacaatttttatgacaactttggttttctctattttgactggtcaagaataatagagaga 30890261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 381
Target Start/End: Complemental strand, 3969027 - 3968980
Alignment:
Q  334 gacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    ||||||||| |||||||||| ||||||||||||||||||| |||||||    
T  3969027 gacaactttaattttctcttctttgattggtcaaaaataatagagaga 3968980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 287
Target Start/End: Original strand, 42132707 - 42132740
Alignment:
Q  254 ctactccctacctctcataataactgagtcattt 287  Q
    ||||||||||| ||||||||||||||||||||||    
T  42132707 ctactccctacatctcataataactgagtcattt 42132740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Complemental strand, 56025399 - 56025362
Alignment:
Q  333 tgacaactttgattttctcttatttgattggtcaaaaa 370  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  56025399 tgacaactttgattttctctcttttgattggtcaaaaa 56025362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 383
Target Start/End: Complemental strand, 6239517 - 6239457
Alignment:
Q  323 acaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagagaaa 383  Q
    ||||| || ||||||||||  |||||||||  ||| ||||||||||||||| |||||||||    
T  6239517 acaacttccatgacaacttcaattttctctatttttattggtcaaaaataatagagagaaa 6239457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 381
Target Start/End: Original strand, 16508889 - 16508953
Alignment:
Q  317 tttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    |||||||||||||   ||||||| || |||||||||  ||| ||||||||||||||| |||||||    
T  16508889 tttggtacaacctacttgacaaccttcattttctctcttttcattggtcaaaaataatagagaga 16508953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 381
Target Start/End: Original strand, 33820253 - 33820312
Alignment:
Q  321 gtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    ||||||||| ||||||||||||  ||||||||  |||||||||| |||||||| |||||||    
T  33820253 gtacaacctttatgacaactttatttttctctcttttgattggt-aaaaataatagagaga 33820312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 294 - 383
Target Start/End: Complemental strand, 35819119 - 35819030
Alignment:
Q  294 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagagaaa 383  Q
    |||||||||| ||| ||||||||||||||||||| |||||||||| ||||||| ||||| |||||||||||||||||||| |||||||||    
T  35819119 gagtagtgatctatgtacaactttttggtacaacttctatgacaattttgattgtctctcatttgattggtcaaaaataatagagagaaa 35819030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 294 - 381
Target Start/End: Original strand, 40719533 - 40719620
Alignment:
Q  294 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    |||||||||| ||| ||||||| ||| ||||||| | ||||||||||||| ||||||||  ||||||||||||||||||| |||||||    
T  40719533 gagtagtgatatatgtacaactctttcgtacaacttttatgacaactttggttttctctcttttgattggtcaaaaataatagagaga 40719620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 294 - 381
Target Start/End: Original strand, 30608599 - 30608686
Alignment:
Q  294 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    |||||||||| | | ||||||| ||| ||||||||| ||||||||||||| |||||| |  |||||||||| ||||||||||||||||    
T  30608599 gagtagtgatatttgtacaactcttttgtacaacctttatgacaactttgtttttctatcttttgattggtaaaaaataacagagaga 30608686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 381
Target Start/End: Original strand, 39153570 - 39153660
Alignment:
Q  291 atagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    ||||||||||||| ||| ||||||| ||| ||| ||| |  |||| ||||||||||||||||  ||||||||||||||||||| |||||||    
T  39153570 atagagtagtgatatatgtacaactctttagtataactttcatgataactttgattttctctcttttgattggtcaaaaataatagagaga 39153660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 381
Target Start/End: Complemental strand, 16808763 - 16808676
Alignment:
Q  294 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    ||||| |||||| | ||||| | |||||| |||| | ||||||||||||||| ||||||| ||||||| ||||||||||| |||||||    
T  16808763 gagtactgatgtttgtacaattctttggttcaacttttatgacaactttgatcttctcttctttgattcgtcaaaaataatagagaga 16808676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 293 - 373
Target Start/End: Complemental strand, 31806482 - 31806402
Alignment:
Q  293 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataa 373  Q
    ||||||||||| ||| || |||| ||||||||||| | ||| ||||||||  |||||||| ||||||||||| ||||||||    
T  31806482 agagtagtgatatatgtataactctttggtacaacttttattacaactttagttttctctcatttgattggtaaaaaataa 31806402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 381
Target Start/End: Original strand, 9550312 - 9550399
Alignment:
Q  294 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    |||||||||| ||| ||||||| |||| |||||| |  ||||||||||| ||||||| |  |||||| |||||||||||| |||||||    
T  9550312 gagtagtgatatatgtacaactctttgatacaactttcatgacaactttaattttctatcttttgataggtcaaaaataatagagaga 9550399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 380
Target Start/End: Original strand, 9048203 - 9048291
Alignment:
Q  292 tagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagag 380  Q
    |||||||||||| | | ||||||| ||| ||||||| | ||||||||||||  || |||||  ||||||| ||||||||||| ||||||    
T  9048203 tagagtagtgatatttgtacaactcttttgtacaacatttatgacaactttatttctctctcttttgatttgtcaaaaataatagagag 9048291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 381
Target Start/End: Original strand, 34996248 - 34996336
Alignment:
Q  293 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    ||||||||||| ||| ||||||| ||||||||||| |  ||||||||||| |||| ||||  ||| |||||||  |||||| |||||||    
T  34996248 agagtagtgatatatgtacaactatttggtacaactttgatgacaactttcatttgctctcttttcattggtccgaaataatagagaga 34996336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 373
Target Start/End: Original strand, 34494527 - 34494606
Alignment:
Q  294 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataa 373  Q
    |||||||||| | | |||| || ||| |||||||   ||||||||||||||||||||||| ||||||||| ||| |||||    
T  34494527 gagtagtgatatttgtacatctctttagtacaactcttatgacaactttgattttctcttctttgattggccaacaataa 34494606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 381
Target Start/End: Original strand, 44380519 - 44380590
Alignment:
Q  310 acaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    |||||| ||| ||||||||| | ||||||| ||  ||||||||| |||||||||||||||| || |||||||    
T  44380519 acaactatttagtacaacctttttgacaacctttcttttctcttttttgattggtcaaaaacaatagagaga 44380590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 381
Target Start/End: Original strand, 30943767 - 30943815
Alignment:
Q  333 tgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    ||||||||||| |||||| | ||||||||||||||||| || |||||||    
T  30943767 tgacaactttgtttttctttcatttgattggtcaaaaacaatagagaga 30943815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 292 - 381
Target Start/End: Complemental strand, 21153236 - 21153147
Alignment:
Q  292 tagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    |||||||||||| ||| ||||||||||||||||||| |  |||||||||||||||||||||  ||||||||||||||||||| |||||||    
T  21153236 tagagtagtgatatatgtacaactttttggtacaactttcatgacaactttgattttctctcttttgattggtcaaaaataatagagaga 21153147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 293 - 382
Target Start/End: Complemental strand, 36920968 - 36920879
Alignment:
Q  293 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagagaa 382  Q
    ||||||||||| ||| ||||||| ||||||||||| | ||| |||||||||||||||||| |||||||||||||||||||| ||||||||    
T  36920968 agagtagtgatatatgtacaactctttggtacaacttttattacaactttgattttctctcatttgattggtcaaaaataatagagagaa 36920879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 294 - 381
Target Start/End: Complemental strand, 33212208 - 33212121
Alignment:
Q  294 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    |||||||||| ||| ||||||| ||||||||||| |||||||||||||| ||| ||||| |||||||||||||||||||| |||||||    
T  33212208 gagtagtgatatatgtacaactctttggtacaacttctatgacaactttaattgtctctcatttgattggtcaaaaataatagagaga 33212121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 309 - 381
Target Start/End: Complemental strand, 42641010 - 42640938
Alignment:
Q  309 tacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    ||||||| ||||||||||| | ||||| ||||||||||||||||| ||||||||||||||||||| |||||||    
T  42641010 tacaactctttggtacaacttttatgataactttgattttctcttttttgattggtcaaaaataatagagaga 42640938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 293 - 383
Target Start/End: Original strand, 6822423 - 6822513
Alignment:
Q  293 agagtagtgatgtatatacaactttttggtacaacctctatg-acaactttgattttctcttatttgattggtcaaaaataacagagagaaa 383  Q
    ||||||||||| | || |||| ||||||||||||| ||| || ||||||||| ||||||||| ||||||||||||||||||| |||||||||    
T  6822423 agagtagtgatatttaaacaagtttttggtacaac-tctttggacaactttggttttctcttctttgattggtcaaaaataatagagagaaa 6822513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 381
Target Start/End: Original strand, 44596029 - 44596120
Alignment:
Q  290 aatagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    |||||||||||||| | | || || | ||||||||||  | ||||||||||||| |||||||| |||||||||||||||||||  |||||||    
T  44596029 aatagagtagtgatatttgtataattctttggtacaaattttatgacaactttggttttctctcatttgattggtcaaaaatattagagaga 44596120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 300 - 380
Target Start/End: Complemental strand, 27075644 - 27075564
Alignment:
Q  300 tgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagag 380  Q
    |||| ||| ||||||| ||||||||||| | ||||| || |||| ||||||||  ||||||||||||||||||| ||||||    
T  27075644 tgatatatgtacaactctttggtacaacttttatgataattttggttttctctcttttgattggtcaaaaataatagagag 27075564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 300 - 380
Target Start/End: Original strand, 27202667 - 27202747
Alignment:
Q  300 tgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagag 380  Q
    |||| ||| ||||||| ||||||||||| | ||||| || |||| ||||||||  ||||||||||||||||||| ||||||    
T  27202667 tgatatatgtacaactctttggtacaacttttatgataattttggttttctctcttttgattggtcaaaaataatagagag 27202747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 383
Target Start/End: Original strand, 27330915 - 27331005
Alignment:
Q  293 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagagaaa 383  Q
    ||||||||||| ||| ||||||| ||||||||||| |  |||| || ||| ||||| | |  || |||||||||||||||| |||||||||    
T  27330915 agagtagtgatatatgtacaactctttggtacaactttcatgataattttaattttttatctttagattggtcaaaaataatagagagaaa 27331005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 42276237 - 42276187
Alignment:
Q  331 tatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    |||| |||||||| |||||||| ||||||| |||||||||||| |||||||    
T  42276237 tatggcaactttggttttctctcatttgataggtcaaaaataatagagaga 42276187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 294 - 383
Target Start/End: Complemental strand, 44059583 - 44059494
Alignment:
Q  294 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagagaaa 383  Q
    |||||||||| | | ||||||||||||||||||| ||| ||||||||||| |||||||| | |||||||||||||||||| |||||||||    
T  44059583 gagtagtgatatttgtacaactttttggtacaacttctgtgacaactttggttttctctcaattgattggtcaaaaataatagagagaaa 44059494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 381
Target Start/End: Original strand, 31635715 - 31635786
Alignment:
Q  310 acaactttttggtacaacctctatg-acaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    |||||||||||||||||| ||| || ||||||||||||||||||| ||||||||||||||||||| |||||||    
T  31635715 acaactttttggtacaac-tctttggacaactttgattttctcttctttgattggtcaaaaataatagagaga 31635786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 310 - 383
Target Start/End: Complemental strand, 11980815 - 11980742
Alignment:
Q  310 acaactttttggtacaacctctatg-acaactttgattttctcttatttgattggtcaaaaataacagagagaaa 383  Q
    |||||||||||||||||| ||| || ||||||||||||||||||| |||||||| |||||||||| |||||||||    
T  11980815 acaactttttggtacaac-tctttggacaactttgattttctcttctttgattgatcaaaaataatagagagaaa 11980742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 381
Target Start/End: Original strand, 16051276 - 16051364
Alignment:
Q  292 tagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    |||||||||||| | | |||| ||||||||||||||   |||||||||||| |||| ||||| ||||||||||||||||||| |||||||    
T  16051276 tagagtagtgatatttgtacatctttttggtacaactcttatgacaactttaattt-ctcttttttgattggtcaaaaataatagagaga 16051364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 381
Target Start/End: Original strand, 41868273 - 41868345
Alignment:
Q  309 tacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    ||||||| |||| |||||| | || |||||||||| ||||||| ||||||||||||||||||||| |||||||    
T  41868273 tacaactctttgatacaacttttacgacaactttggttttctcatatttgattggtcaaaaataatagagaga 41868345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 372
Target Start/End: Complemental strand, 4723749 - 4723670
Alignment:
Q  293 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaata 372  Q
    |||| |||||| ||| ||||||| ||||||||||| | ||| ||||||||  ||||||||  ||||||||||||||||||    
T  4723749 agagcagtgatatatgtacaactctttggtacaacttttataacaactttagttttctctcttttgattggtcaaaaata 4723670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 370
Target Start/End: Original strand, 29192534 - 29192614
Alignment:
Q  290 aatagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaa 370  Q
    |||||||||||||| | | |||| || |||  |||||| | ||||||||||||| ||||||||| | ||||||||||||||    
T  29192534 aatagagtagtgatatttgtacatctctttcttacaacttttatgacaactttgtttttctcttctatgattggtcaaaaa 29192614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 381
Target Start/End: Original strand, 13465993 - 13466051
Alignment:
Q  323 acaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    ||||| || |||||||||||| ||||||||  ||||||||||||||| ||| |||||||    
T  13465993 acaacttccatgacaactttgtttttctctattttgattggtcaaaattaatagagaga 13466051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 381
Target Start/End: Complemental strand, 17917570 - 17917484
Alignment:
Q  295 agtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    ||||||||| ||| |||||  ||||| |||||  | ||| ||||||||| |||||| || ||||||||||||||||||  |||||||    
T  17917570 agtagtgatatatgtacaatcttttgatacaatttttataacaactttggttttcttttttttgattggtcaaaaatattagagaga 17917484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 381
Target Start/End: Complemental strand, 1151689 - 1151624
Alignment:
Q  316 ttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    |||||||||||||| |  |||||||||| | ||||||| ||| |||||||||||| || |||||||    
T  1151689 ttttggtacaacctttgagacaactttgttgttctcttttttcattggtcaaaaacaatagagaga 1151624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 43057590 - 43057639
Alignment:
Q  332 atgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    |||||||||||  ||||||||  ||||||||||||||||||| |||||||    
T  43057590 atgacaactttagttttctctcttttgattggtcaaaaataatagagaga 43057639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 289 - 381
Target Start/End: Original strand, 40159710 - 40159802
Alignment:
Q  289 caatagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    ||||||||||||||| ||| ||||||| ||||||||||| |  |||||||||||| ||||||||  ||||||||||||||||||| |||||||    
T  40159710 caatagagtagtgatatatgtacaactctttggtacaactttcatgacaactttggttttctctcttttgattggtcaaaaataatagagaga 40159802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 383
Target Start/End: Original strand, 31017286 - 31017374
Alignment:
Q  294 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagagaaa 383  Q
    |||||||||| ||| ||||||| |||| || ||| |||||||||||||||||||||||| ||||||||||| |||||||| |||||||||    
T  31017286 gagtagtgatatatgtacaactctttgata-aacttctatgacaactttgattttctctcatttgattggtaaaaaataatagagagaaa 31017374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 294 - 381
Target Start/End: Original strand, 11335191 - 11335278
Alignment:
Q  294 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    |||||||||| ||| ||||||| ||||||||||| | ||| ||||||||  |||||||| |||||||||||||||||||| |||||||    
T  11335191 gagtagtgatatatgtacaactctttggtacaacttttattacaactttagttttctctcatttgattggtcaaaaataatagagaga 11335278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 381
Target Start/End: Original strand, 47988362 - 47988461
Alignment:
Q  282 tcattttcaatagagtagtgatgtatatacaactttttggtacaacctctatg-acaactttgattttctcttatttgattggtcaaaaataacagagag 380  Q
    |||||||||  ||||||||||| | |  ||| |||||||||||||| ||| || ||||||||||||||||||| ||||||||||||||||||| ||||||    
T  47988362 tcattttcacaagagtagtgatatttgaacagctttttggtacaac-tctttggacaactttgattttctcttctttgattggtcaaaaataatagagag 47988460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 381
Target Start/End: Original strand, 47997649 - 47997748
Alignment:
Q  282 tcattttcaatagagtagtgatgtatatacaactttttggtacaacctctatg-acaactttgattttctcttatttgattggtcaaaaataacagagag 380  Q
    |||||||||  ||||||||||| | |  ||| |||||||||||||| ||| || ||||||||||||||||||| ||||||||||||||||||| ||||||    
T  47997649 tcattttcacaagagtagtgatatttgaacagctttttggtacaac-tctttggacaactttgattttctcttctttgattggtcaaaaataatagagag 47997747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 381
Target Start/End: Original strand, 48006936 - 48007035
Alignment:
Q  282 tcattttcaatagagtagtgatgtatatacaactttttggtacaacctctatg-acaactttgattttctcttatttgattggtcaaaaataacagagag 380  Q
    |||||||||  ||||||||||| | |  ||| |||||||||||||| ||| || ||||||||||||||||||| ||||||||||||||||||| ||||||    
T  48006936 tcattttcacaagagtagtgatatttgaacagctttttggtacaac-tctttggacaactttgattttctcttctttgattggtcaaaaataatagagag 48007034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 293 - 379
Target Start/End: Complemental strand, 50745543 - 50745457
Alignment:
Q  293 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagaga 379  Q
    |||||||| || ||| ||||||| ||||||||||| |||||||||||||| ||| ||||| ||||||||||| ||| |||| |||||    
T  50745543 agagtagtaatatatgtacaactctttggtacaacttctatgacaactttaattgtctctcatttgattggtaaaagataatagaga 50745457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 293 - 383
Target Start/End: Original strand, 51032514 - 51032604
Alignment:
Q  293 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagagaaa 383  Q
    ||||||||||| ||| |||||||||||  |||||| |  ||||||||||| ||||||| |  ||||||||||||||||||| |||||||||    
T  51032514 agagtagtgatatatgtacaacttttttatacaactttcatgacaactttaattttctatcttttgattggtcaaaaataatagagagaaa 51032604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 382
Target Start/End: Complemental strand, 41369760 - 41369673
Alignment:
Q  295 agtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagagaa 382  Q
    ||||||||| ||| ||||  | ||||||||||| | ||||||||||||  ||||||||  ||||||||||||||||||| ||||||||    
T  41369760 agtagtgatatatgtacacttctttggtacaacttttatgacaactttagttttctctcttttgattggtcaaaaataatagagagaa 41369673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 13724337 - 13724386
Alignment:
Q  332 atgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||||||    
T  13724337 atgacaactttgattttctctcttttaattggtcaaaaataacagagaga 13724386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 381
Target Start/End: Complemental strand, 22154047 - 22153959
Alignment:
Q  293 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    ||||||||||| | | ||||||  ||||||||||| |  ||||||||||| |||| ||||  ||| ||||||| |||||||||||||||    
T  22154047 agagtagtgatatttgtacaaccatttggtacaactttaatgacaactttcatttgctctcttttcattggtccaaaataacagagaga 22153959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 381
Target Start/End: Original strand, 39350509 - 39350545
Alignment:
Q  345 ttttctcttatttgattggtcaaaaataacagagaga 381  Q
    ||||||||||||||||||||||||||||| |||||||    
T  39350509 ttttctcttatttgattggtcaaaaataatagagaga 39350545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 370
Target Start/End: Complemental strand, 32795995 - 32795942
Alignment:
Q  317 tttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaa 370  Q
    ||||||||||||| | |||||||||| |||||||||  ||| ||||||||||||    
T  32795995 tttggtacaacctatttgacaactttcattttctctctttttattggtcaaaaa 32795942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Complemental strand, 41877831 - 41877794
Alignment:
Q  333 tgacaactttgattttctcttatttgattggtcaaaaa 370  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  41877831 tgacaactttgtttttctcttttttgattggtcaaaaa 41877794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 293 - 379
Target Start/End: Complemental strand, 15098921 - 15098835
Alignment:
Q  293 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagaga 379  Q
    ||||| ||||| ||| ||||| ||||||||||||| |||||||||||||||||||||||| ||||||||| | |||||||| |||||    
T  15098921 agagttgtgatatatgtacaattttttggtacaacttctatgacaactttgattttctctcatttgattgataaaaaataatagaga 15098835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 380
Target Start/End: Original strand, 26391169 - 26391258
Alignment:
Q  291 atagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagag 380  Q
    ||||||||||||| |||  |||||| ||||||| ||| |  |||||||||||  |||||| |  ||||||||||||||||||| ||||||    
T  26391169 atagagtagtgatatatgaacaactctttggtataactttcatgacaactttagttttctatcttttgattggtcaaaaataatagagag 26391258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 27102267 - 27102202
Alignment:
Q  309 tacaactttttggtacaacctctatgacaactttgattttctct-tatttgattggtcaaaaataa 373  Q
    ||||||| ||||||||||| |  ||||||||||||||||||||| | ||| |||||||||||||||    
T  27102267 tacaactctttggtacaactttcatgacaactttgattttctctctttttaattggtcaaaaataa 27102202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 27144089 - 27144024
Alignment:
Q  309 tacaactttttggtacaacctctatgacaactttgattttctct-tatttgattggtcaaaaataa 373  Q
    ||||||| ||||||||||| |  ||||||||||||||||||||| | ||| |||||||||||||||    
T  27144089 tacaactctttggtacaactttcatgacaactttgattttctctctttttaattggtcaaaaataa 27144024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 372
Target Start/End: Original strand, 8778779 - 8778839
Alignment:
Q  312 aactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaata 372  Q
    |||| ||||||||||| | ||||||||||| ||||||||||  |||||||| |||||||||    
T  8778779 aactatttggtacaacttttatgacaacttagattttctctcttttgattgatcaaaaata 8778839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 28883673 - 28883722
Alignment:
Q  332 atgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    |||||||||||| ||||||||| | |||||||||||||| || |||||||    
T  28883673 atgacaactttgtttttctcttctatgattggtcaaaaacaatagagaga 28883722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 294 - 381
Target Start/End: Original strand, 36415951 - 36416038
Alignment:
Q  294 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    |||||||||| ||| ||||||| ||||||||||| |  |||||||||||| ||||||||  ||||||||||||||||||  |||||||    
T  36415951 gagtagtgatatatgtacaactctttggtacaactttcatgacaactttggttttctctcttttgattggtcaaaaatactagagaga 36416038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 381
Target Start/End: Complemental strand, 285418 - 285321
Alignment:
Q  284 attttcaatagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    |||||| | ||||||||||| ||| ||||||| ||| ||||||| |  ||| ||||||| ||||||| |  |||||||||||||||||||||||||||    
T  285418 attttcgaaagagtagtgatatatgtacaactctttagtacaactttcatgccaactttaattttctatcttttgattggtcaaaaataacagagaga 285321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 295 - 383
Target Start/End: Complemental strand, 32425133 - 32425045
Alignment:
Q  295 agtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagagaaa 383  Q
    ||||||||  ||| ||||||| ||||||||||| |  ||||||||||| ||||||| |  ||||||||||||||||||| |||||||||    
T  32425133 agtagtgacatatgtacaactatttggtacaactttcatgacaactttaattttctatcttttgattggtcaaaaataatagagagaaa 32425045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 383
Target Start/End: Complemental strand, 20125574 - 20125483
Alignment:
Q  292 tagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagagaaa 383  Q
    |||||| ||||| ||||||||||| ||||| ||||| |  ||||||||||| |||||||||  | | |||||||||||| ||||||||||||    
T  20125574 tagagtggtgatatatatacaactatttgggacaactttgatgacaactttcattttctctcttctcattggtcaaaaacaacagagagaaa 20125483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 381
Target Start/End: Original strand, 15290911 - 15290997
Alignment:
Q  295 agtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    ||||||||| ||| ||||||| ||||||||||| | ||| | || ||| ||||||||   ||||||||||||||||||| |||||||    
T  15290911 agtagtgatatatgtacaactctttggtacaacttttataataattttaattttctcccttttgattggtcaaaaataatagagaga 15290997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 381
Target Start/End: Original strand, 18638729 - 18638817
Alignment:
Q  293 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    ||||||||||| ||| ||||||  ||||| ||||| |  ||||||||||| |||||||||| | | ||||||| ||||||| |||||||    
T  18638729 agagtagtgatatatgtacaaccatttgggacaactttgatgacaacttttattttctcttttcttattggtccaaaataatagagaga 18638817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 373
Target Start/End: Original strand, 7077267 - 7077307
Alignment:
Q  333 tgacaactttgattttctcttatttgattggtcaaaaataa 373  Q
    ||||||||||| ||||||||  |||||||||||||||||||    
T  7077267 tgacaactttgtttttctctcttttgattggtcaaaaataa 7077307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 381
Target Start/End: Complemental strand, 404928 - 404843
Alignment:
Q  296 gtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagagaga 381  Q
    |||||||| | | ||||||| ||||||||||| | ||||||||||||| ||||||||| || ||||||||| |||||  |||||||    
T  404928 gtagtgatatttgtacaactctttggtacaacttttatgacaactttgtttttctcttcttcgattggtcataaatactagagaga 404843  T

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