View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19330_low_11 (Length: 394)
Name: NF19330_low_11
Description: NF19330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19330_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 43453933 - 43453571
Alignment:
| Q |
18 |
atgaagaaagctattaagagcaagcatagaaaggattctgtgttctatatccttagcagaatttaatttatttacgaacggctttagcaaacagacacgg |
117 |
Q |
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| T |
43453933 |
atgaagaaagctattaagagcaagcatagaaaggattctgtgttctatatccttagcagaatttaatttatttacgaacggctttagcaaacagacacgg |
43453834 |
T |
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| Q |
118 |
gctgctccttgtatccctgtatctggtagagtggtcagcatgtatatgagccacgtagctgatataaagcatgctgaacgtagctctggaattctactct |
217 |
Q |
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| T |
43453833 |
gctgctccttgtatccctgtatctggtagagtggtcagcatgtatatgagccacgtagctgatataaagcatgctgaacgtagctctggaattctactct |
43453734 |
T |
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| Q |
218 |
tcatgccatctgccaaagcttcaaaaagtataccaaactcgtggctaactagaacagatgcaatttttctttcccaatcatctgctgctctctcttcttc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43453733 |
tcatgccatctgccaaagcttcaaaaagtataccaaactcgtggctaactagaacagatgcaatttttctttcccaatcatctgctgctctctcttcttc |
43453634 |
T |
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| Q |
318 |
ctattgattccgagtatataacaatatttttaaaataatagaacaccaaacaaacaaacaaaa |
380 |
Q |
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| T |
43453633 |
ctattgattccgagtatataacaatatttttaaaataatagaacaccaaacaaacaaacaaaa |
43453571 |
T |
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