View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19330_low_12 (Length: 394)
Name: NF19330_low_12
Description: NF19330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19330_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 36287864 - 36287477
Alignment:
| Q |
1 |
taactattcataccttgatctctgggtttttctccttaaggaacttcccaacacctgttattgttcctccagttcctatccctgcaaccaaagcatcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36287864 |
taactattcataccttgatctctgggtttttctccttaaggaacttcccaacacctgttattgttcctccagttcctatccctgcaaccaaagcatcaat |
36287765 |
T |
|
| Q |
101 |
tctccctccagtgtctctccaaatctcagggctagtggtctcataatgaatctaaaagtaatgaccaattaatcggctcagnnnnnnnnccaattcataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||| |
|
|
| T |
36287764 |
tctccctccagtgtctctccaaatctcagggccagtggtctcataatgaatctaaaagtaacgaccaattaattggctcagttttttttccaattcataa |
36287665 |
T |
|
| Q |
201 |
accatattaggaaatataaataatgacaataccttcggattggcaggattttcaaattgattgaacatataactattaggcgtcttctctaatagctctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36287664 |
accatattaggaaatataaataatgacaataccttcggattggcaggattttcaaattgattgaacatataactattaggcgtcttctctaatagctctt |
36287565 |
T |
|
| Q |
301 |
ccgatttctcaaaaacaccatctattcctttggcatggtctgttagatatacctcagctccaaaagctctgagtagaattcttctctc |
388 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36287564 |
ccgctttctcaaaaacaccatctattcctttggcaggatctgttagatatacctcagctccaaaagctctgagtagaattcttctctc |
36287477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 12 - 367
Target Start/End: Complemental strand, 36293398 - 36293047
Alignment:
| Q |
12 |
accttgatctctgggtttttctccttaaggaacttcccaacacctgttattgttcctccagttcctatccctgcaaccaaagcatcaattctccctccag |
111 |
Q |
| |
|
|||||||| ||| |||| ||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36293398 |
accttgatatctaagtttctctccttgaggaacttcccagcacctgttattgttcccccagttcctatccctgcaaccaaagcatcaattctctctccag |
36293299 |
T |
|
| Q |
112 |
tgtctctccaaatctcagggctagtggtctcataatgaatctaaaagtaatgaccaattaatcggctcagnnnnnnnnccaattcataaaccatattagg |
211 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||| | |||| ||||||||| || | ||| || ||||| |||||| |
|
|
| T |
36293298 |
tgtctctccaaatctcagggcctgtggtctcataatgagtctaaaa--attgacaaattaatcgactaa--acttttttcaacctatcaaccaaattagg |
36293203 |
T |
|
| Q |
212 |
aaatataaataatgacaataccttcggattggcaggattttcaaattgattgaacatataactattaggcgtcttctctaatagctcttccgatttctca |
311 |
Q |
| |
|
||||| ||| |||| |||||||| |||||| ||||||||||||||||||||| ||||||||||||||| ||||| |||||||||| | | || ||| |
|
|
| T |
36293202 |
caatatgaattatgaaaatacctttggattgacaggattttcaaattgattgagcatataactattaggtgtctttgctaatagctcgtatgccttttca |
36293103 |
T |
|
| Q |
312 |
aaaacaccatctattcctttggcatggtctgttagatatacctcagctccaaaagc |
367 |
Q |
| |
|
||||| || || | |||||||||| ||||||| ||||||||||| ||||| ||||| |
|
|
| T |
36293102 |
aaaactccgtcaactcctttggcagggtctgtcagatatacctcggctccgaaagc |
36293047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 5 - 369
Target Start/End: Complemental strand, 36281920 - 36281557
Alignment:
| Q |
5 |
tattcataccttgatctctgggtttttctccttaaggaacttcccaacacctgttattgttcctccagttcctatccctgcaaccaaagcatcaattctc |
104 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||| |||||||| |||||| ||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
36281920 |
tattcataccttgatatctggatttttctccttaaggaacttcccagtacctgttactgttcccccagttcctattcctgcaaccaaagcatcaactctc |
36281821 |
T |
|
| Q |
105 |
cctccagtgtctctccaaatctcagggctagtggtctcataatgaatctaaaagtaatgaccaattaatcggctcagnnnnnnnnccaattcataaacca |
204 |
Q |
| |
|
||||||| |||| ||||||||||||||| ||||||||| |||||||||||||| || ||| ||||||| || | || | | ||||| |
|
|
| T |
36281820 |
cctccagagtctttccaaatctcagggccagtggtctcgtaatgaatctaaaa-caacgacaaattaattggttacaatttttttcccaccaaacaacca |
36281722 |
T |
|
| Q |
205 |
tattaggaaatataaataatgacaataccttcggattggcaggattttcaaattgattgaacatataactattaggcgtcttctctaatagctcttccga |
304 |
Q |
| |
|
||||| |||||| || ||| || ||||| |||||||||| |||||||| ||||||| | |||||||||||||||||||| |||||||||| || | |
|
|
| T |
36281721 |
aattagaaaatatgaactgtgataacacctttggattggcagagttttcaaactgattgagcttataactattaggcgtcttcgctaatagctcgtctgc |
36281622 |
T |
|
| Q |
305 |
tttctcaaaaacaccatctattcctttggcatggtctgttagatatacctcagctccaaaagctc |
369 |
Q |
| |
|
||||| |||||||||||| |||||||||||| ||||||| | ||||||||| ||||| ||||||| |
|
|
| T |
36281621 |
tttctgaaaaacaccatcaattcctttggcagggtctgtcaaatatacctcggctccgaaagctc |
36281557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 42187190 - 42187151
Alignment:
| Q |
133 |
tagtggtctcataatgaatctaaaagtaatgaccaattaat |
173 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
42187190 |
tagtggtctcataatgaatctaaaagt-atgacaaattaat |
42187151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University