View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19330_low_15 (Length: 341)
Name: NF19330_low_15
Description: NF19330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19330_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 40309923 - 40310230
Alignment:
| Q |
19 |
atcatccatctatttgaattttgaacaacatcaattacttaaaaaggttattgctaaagttgtttacaatcaattgtttaaataacaacgctgcaaaata |
118 |
Q |
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| T |
40309923 |
atcatccatctatttgaattttgaacaacatcaattacttaaaaaggttattgctaaagttgtttacaatcaat-gtttaaataacaacgctgcaaaata |
40310021 |
T |
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| Q |
119 |
aaatataggaatgcaactttgtgatttaaaccattatgcttatcnnnnnnnnngttcattttatcacacttttggttcttgcttgtctttatttacttac |
218 |
Q |
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| T |
40310022 |
aaatataggagtgcaactttgtgatttaaaccattatgcttaacttttttttggttcattttatcacactttttgttcttgcttgtctttatttacttac |
40310121 |
T |
|
| Q |
219 |
acaatatggtgatgattccaaagaatggagtaagtgtggaaatcagcagaaggatcaaaccaaagattaactctttgttctctgtcaccctttccatgag |
318 |
Q |
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| T |
40310122 |
acaatatggtgatgattccaaagaatggagtaagtgtggaaatcagcagaaggatcaaaccaaagattaactctttgttctctatcaccctttccatgag |
40310221 |
T |
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| Q |
319 |
cataaatgt |
327 |
Q |
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||||||||| |
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| T |
40310222 |
cataaatgt |
40310230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 40329464 - 40329772
Alignment:
| Q |
19 |
atcatccatctatttgaattttgaacaacatcaattacttaaaaaggttattgctaaagttgtttacaatcaattgtttaaataacaacgctgcaaaata |
118 |
Q |
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| T |
40329464 |
atcatccatctatttgaattttgaacaacatcaattacttaaaaaggttattgctaaagttgtttacaatcaat-gtttaaataacaacgctgcaaaata |
40329562 |
T |
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| Q |
119 |
aaatataggaatgcaactttgtgatttaaaccattatgcttatcnnnnnnnnng-ttcattttatcacacttttggttcttgcttgtctttatttactta |
217 |
Q |
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| T |
40329563 |
aaatataggagtgcaactttgtgatttaaaccattatgcttaactttttttttggttcattttatcacactttttgttcttgcttgtctttatttactta |
40329662 |
T |
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| Q |
218 |
cacaatatggtgatgattccaaagaatggagtaagtgtggaaatcagcagaaggatcaaaccaaagattaactctttgttctctgtcaccctttccatga |
317 |
Q |
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| T |
40329663 |
cacaatatggtgatgattccaaagaatggagtaagtgtggaaatcagcagaaggatcaaaccaaagattaactctttgttctctatcaccctttccatga |
40329762 |
T |
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| Q |
318 |
gcataaatgt |
327 |
Q |
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|||||||||| |
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| T |
40329763 |
gcataaatgt |
40329772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 212 - 327
Target Start/End: Original strand, 40320191 - 40320306
Alignment:
| Q |
212 |
tacttacacaatatggtgatgattccaaagaatggagtaagtgtggaaatcagcagaaggatcaaaccaaagattaactctttgttctctgtcacccttt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40320191 |
tacttacacaatatggtgatgattccaaagaatggagtaagtgtggaaatcagcagaaggatcaaaccaaagattaactctttgttctctatcacccttt |
40320290 |
T |
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| Q |
312 |
ccatgagcataaatgt |
327 |
Q |
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|||||||||||||||| |
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| T |
40320291 |
ccatgagcataaatgt |
40320306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 285
Target Start/End: Complemental strand, 53495155 - 53495084
Alignment:
| Q |
214 |
cttacacaatatggtgatgattccaaagaatggagtaagtgtggaaatcagcagaaggatcaaaccaaagat |
285 |
Q |
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|||||||||| | ||| ||||||||||||||||||| ||||| |||||||||| ||||||||||| |||| |
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| T |
53495155 |
cttacacaatgcgttgaggattccaaagaatggagtatgtgtgaaaatcagcagttggatcaaaccatagat |
53495084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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