View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19330_low_16 (Length: 313)

Name: NF19330_low_16
Description: NF19330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19330_low_16
NF19330_low_16
[»] chr4 (27 HSPs)
chr4 (1-157)||(28470776-28470932)
chr4 (158-297)||(28470975-28471114)
chr4 (11-138)||(43798269-43798396)
chr4 (21-143)||(49405676-49405798)
chr4 (12-140)||(80465-80593)
chr4 (92-138)||(51407995-51408041)
chr4 (92-138)||(55892031-55892077)
chr4 (43-144)||(7505528-7505629)
chr4 (9-144)||(11055266-11055401)
chr4 (12-144)||(22721296-22721427)
chr4 (98-138)||(28265719-28265759)
chr4 (94-138)||(51995128-51995172)
chr4 (43-138)||(12673074-12673169)
chr4 (93-144)||(16742376-16742427)
chr4 (39-130)||(56224140-56224231)
chr4 (44-142)||(40797830-40797928)
chr4 (40-125)||(44378246-44378331)
chr4 (15-64)||(48802596-48802645)
chr4 (38-138)||(13455695-13455795)
chr4 (30-121)||(49083297-49083388)
chr4 (98-144)||(52706271-52706317)
chr4 (39-120)||(9469772-9469853)
chr4 (39-120)||(36543776-36543857)
chr4 (56-124)||(5762605-5762673)
chr4 (94-138)||(9874254-9874298)
chr4 (94-130)||(19455212-19455248)
chr4 (94-130)||(38791742-38791778)
[»] chr1 (24 HSPs)
chr1 (11-128)||(39802823-39802940)
chr1 (9-144)||(15306458-15306593)
chr1 (41-144)||(31869591-31869694)
chr1 (12-138)||(50447309-50447435)
chr1 (12-124)||(29677579-29677691)
chr1 (93-137)||(31816617-31816661)
chr1 (95-138)||(7841674-7841717)
chr1 (98-137)||(48575127-48575166)
chr1 (92-138)||(7996019-7996065)
chr1 (46-144)||(14796590-14796688)
chr1 (46-144)||(14805464-14805562)
chr1 (12-138)||(28006318-28006444)
chr1 (39-131)||(25124938-25125030)
chr1 (94-142)||(27076557-27076605)
chr1 (11-63)||(29113645-29113697)
chr1 (11-138)||(42916160-42916287)
chr1 (15-130)||(42937045-42937160)
chr1 (98-144)||(19508582-19508628)
chr1 (94-140)||(20349196-20349242)
chr1 (93-143)||(45581049-45581099)
chr1 (95-140)||(24575960-24576005)
chr1 (94-143)||(45653472-45653521)
chr1 (94-130)||(12224629-12224665)
chr1 (94-130)||(35810768-35810804)
[»] chr3 (13 HSPs)
chr3 (9-144)||(28242548-28242683)
chr3 (43-144)||(9505161-9505262)
chr3 (15-131)||(18074547-18074663)
chr3 (9-144)||(52934777-52934912)
chr3 (90-140)||(31589668-31589718)
chr3 (41-130)||(52199426-52199515)
chr3 (94-130)||(54393497-54393533)
chr3 (93-124)||(9195879-9195910)
chr3 (43-138)||(12710701-12710796)
chr3 (44-138)||(20550248-20550342)
chr3 (12-138)||(30662177-30662303)
chr3 (92-130)||(33438785-33438823)
chr3 (11-60)||(33896797-33896846)
[»] chr5 (14 HSPs)
chr5 (12-124)||(10493953-10494065)
chr5 (11-143)||(32945062-32945194)
chr5 (10-143)||(10327896-10328029)
chr5 (92-138)||(5382871-5382917)
chr5 (94-144)||(41783375-41783425)
chr5 (39-140)||(20188968-20189069)
chr5 (39-120)||(38522925-38523006)
chr5 (43-130)||(1840741-1840828)
chr5 (94-144)||(19282154-19282204)
chr5 (98-144)||(26218101-26218147)
chr5 (12-66)||(36523719-36523773)
chr5 (92-142)||(36523803-36523853)
chr5 (94-138)||(17168489-17168533)
chr5 (90-138)||(26298357-26298405)
[»] chr6 (13 HSPs)
chr6 (12-138)||(18099784-18099910)
chr6 (12-138)||(3081764-3081890)
chr6 (39-140)||(10961840-10961941)
chr6 (12-124)||(7437272-7437384)
chr6 (15-138)||(5640298-5640421)
chr6 (93-143)||(17441207-17441257)
chr6 (12-138)||(18095487-18095613)
chr6 (96-144)||(11460054-11460102)
chr6 (12-138)||(13311990-13312116)
chr6 (98-144)||(33110512-33110558)
chr6 (94-138)||(6999317-6999361)
chr6 (14-66)||(10474454-10474506)
chr6 (96-140)||(11703570-11703614)
[»] chr7 (15 HSPs)
chr7 (11-142)||(222268-222399)
chr7 (92-138)||(18250039-18250085)
chr7 (41-143)||(21760624-21760726)
chr7 (92-138)||(49034270-49034316)
chr7 (95-144)||(24128540-24128589)
chr7 (11-138)||(33935480-33935607)
chr7 (98-144)||(11595836-11595882)
chr7 (98-144)||(40480090-40480136)
chr7 (98-144)||(45055787-45055833)
chr7 (92-138)||(46573658-46573704)
chr7 (92-137)||(35543603-35543648)
chr7 (94-138)||(29037826-29037870)
chr7 (94-138)||(32357016-32357060)
chr7 (94-138)||(36472494-36472538)
chr7 (93-129)||(48634501-48634537)
[»] scaffold0171 (1 HSPs)
scaffold0171 (40-138)||(21084-21181)
[»] chr2 (11 HSPs)
chr2 (93-138)||(13829927-13829972)
chr2 (12-121)||(40458889-40458998)
chr2 (46-143)||(24844707-24844804)
chr2 (90-130)||(20203768-20203808)
chr2 (41-143)||(3409229-3409331)
chr2 (44-131)||(11007025-11007112)
chr2 (95-138)||(31000891-31000934)
chr2 (98-144)||(2647014-2647060)
chr2 (92-142)||(27464614-27464664)
chr2 (11-128)||(26436321-26436438)
chr2 (94-138)||(30713206-30713250)
[»] scaffold0444 (1 HSPs)
scaffold0444 (40-125)||(826-911)
[»] chr8 (6 HSPs)
chr8 (93-138)||(43384843-43384888)
chr8 (97-140)||(22564059-22564102)
chr8 (97-140)||(28492705-28492748)
chr8 (92-138)||(1091775-1091821)
chr8 (92-138)||(27189128-27189174)
chr8 (94-140)||(33280021-33280067)
[»] scaffold0223 (1 HSPs)
scaffold0223 (95-143)||(14477-14525)
[»] scaffold0224 (1 HSPs)
scaffold0224 (11-138)||(7354-7481)
[»] scaffold0260 (1 HSPs)
scaffold0260 (94-140)||(11519-11565)
[»] scaffold0063 (1 HSPs)
scaffold0063 (92-136)||(51350-51394)


Alignment Details
Target: chr4 (Bit Score: 141; Significance: 6e-74; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 28470776 - 28470932
Alignment:
Q  1 gtgtgtatagctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  28470776 gtgtgtatagctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgaaattaatttacagttcacaattgactcattt 28470875  T
Q  101 ggtttatgaaccaagttcaacgaattaattaccgaatcaagttcgtacttttttcga 157  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28470876 ggttcatgaaccaagttcaacgaattaattaccgaatcgagttcgtacttttttcga 28470932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 158 - 297
Target Start/End: Original strand, 28470975 - 28471114
Alignment:
Q  158 caatatgctgttgcgagaaaactggatcaccaacaggcgcaagcgcaactacatgattcttgattcaaagcaaatgttcctcaatcgaacgatcattgag 257  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||    
T  28470975 caatatgctgttgcgacaaaactggatcaccaacaggtgcaagcgcaactacacggttcttgattcaaagcaaatgttcctcaaccgaacgatcattgag 28471074  T
Q  258 agaagtagagcaaagtatcactcgtaactgccgtgctttc 297  Q
    |||||||||||||||||||||||||||| | |||||||||    
T  28471075 agaagtagagcaaagtatcactcgtaacagtcgtgctttc 28471114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 43798396 - 43798269
Alignment:
Q  11 ctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaa 110  Q
    ||||||||| |||||||| || |||| ||||||||||||||| ||||||||||||||||| || ||||     |||   | ||||||||||||| | |||    
T  43798396 ctcatgaaccaaacgagtcgaactatacatagctcaagttcaactcatttatttaatgatcttcattttttactcaagctcgactcatttggttcaagaa 43798297  T
Q  111 ccaagttcaacgaattaattaccgaatc 138  Q
    || |||||||||| ||||||| ||||||    
T  43798296 ccgagttcaacgagttaattatcgaatc 43798269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 143
Target Start/End: Complemental strand, 49405798 - 49405676
Alignment:
Q  21 aaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaa 120  Q
    |||||||| || |||| |||| ||||||||| |||||||||||| | ||  ||||||| |  ||||   | ||||||||||||| || ||||||||||||    
T  49405798 aaacgagtcgaactatccataactcaagttcggctcatttatttgacgagcttaattttcgattcaagttcgactcatttggttcataaaccaagttcaa 49405699  T
Q  121 cgaattaattaccgaatcaagtt 143  Q
    ||||| |||||||||||| ||||    
T  49405698 cgaatcaattaccgaatcgagtt 49405676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 80465 - 80593
Alignment:
Q  12 tcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaac 111  Q
    |||||||| |||||||| ||  ||| | ||| |||||||| |||||||||||| | ||  ||||||| ||  |||   | ||||||||||||| ||||||    
T  80465 tcatgaaccaaacgagtcgaattatacgtagttcaagttcggctcatttatttgacgagcttaattttcaactcaagttcgactcatttggttcatgaac 80564  T
Q  112 caagttcaacgaattaattaccgaatcaa 140  Q
    |||||||||||||  ||||||||||||||    
T  80565 caagttcaacgaaacaattaccgaatcaa 80593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 51408041 - 51407995
Alignment:
Q  92 gactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||    
T  51408041 gactcatttggttcatgaaccaagttgaacgaattaattaccgaatc 51407995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 55892077 - 55892031
Alignment:
Q  92 gactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||    
T  55892077 gactcgtttggttcatgaaccaagttcaacgaattaattaccgaatc 55892031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 7505528 - 7505629
Alignment:
Q  43 ctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagt 142  Q
    |||||||||| |||||||| |||| || ||||||||  || |||   | | ||||||||||| ||||| ||||||||||||| |||||||||| ||||||    
T  7505528 ctcaagttcaactcatttagttaacgaatttaatttttagctcaagttcggctcatttggttcatgaatcaagttcaacgaactaattaccgagtcaagt 7505627  T
Q  143 tc 144  Q
    ||    
T  7505628 tc 7505629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 11055401 - 11055266
Alignment:
Q  9 agctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattga-ctcatttggtttat 107  Q
    ||||||||||| || ||||| || ||||  | ||||||||||| |||||||||||||| ||  ||||||| | | ||| | || | ||||||||||| ||    
T  11055401 agctcatgaaccaatcgagtcgaactatatacagctcaagttcggctcatttatttaacgaacttaattttccgctca-agttcagctcatttggttcat 11055303  T
Q  108 gaaccaagttcaacgaattaattaccgaatcaagttc 144  Q
    ||||||||||||| || ||||||| |||||| |||||    
T  11055302 gaaccaagttcaatgagttaattatcgaatcgagttc 11055266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 22721296 - 22721427
Alignment:
Q  12 tcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaac 111  Q
    |||||||| |||||||| || ||||  ||| |||||||||| ||||||||||||| ||  |||||||  || | |   ||| ||| ||||||| ||||||    
T  22721296 tcatgaaccaaacgagtcgaactatatataactcaagttcaactcatttatttaacgaacttaatttt-agcttaagtttgcctcgtttggttcatgaac 22721394  T
Q  112 caagttcaacgaattaattaccgaatcaagttc 144  Q
    ||||||||| ||| ||||||||||||| |||||    
T  22721395 caagttcaatgaactaattaccgaatcgagttc 22721427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 28265759 - 28265719
Alignment:
Q  98 tttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  28265759 tttggttcatgaaccaagttcaacgaattaattaccgaatc 28265719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 51995128 - 51995172
Alignment:
Q  94 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||    
T  51995128 ctcatttggttcatgaaccaagttcaacgaattaattatcgaatc 51995172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 12673169 - 12673074
Alignment:
Q  43 ctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    |||||||||  ||||||||||||||||  ||||||| ||  |||   | ||||||||||||| |||||||||||||||||| | ||||| ||||||    
T  12673169 ctcaagttcgactcatttatttaatgagcttaattttcaactcaagttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatc 12673074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 16742427 - 16742376
Alignment:
Q  93 actcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 144  Q
    |||||||||||| |||||||||||||||||||| |||| ||||||| |||||    
T  16742427 actcatttggttcatgaaccaagttcaacgaatcaattgccgaatcgagttc 16742376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 56224140 - 56224231
Alignment:
Q  39 atagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaatt 130  Q
    |||| ||||||||| || ||||| |||| || |||||||| ||| |||   | | |||||||||||||| ||||||||||||||||||||||    
T  56224140 atagttcaagttcaacttatttaattaacgaatttaattttcagctcaagttcggctcatttggtttattaaccaagttcaacgaattaatt 56224231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 142
Target Start/End: Original strand, 40797830 - 40797928
Alignment:
Q  44 tcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagt 142  Q
    ||||||||| ||||||||||||| ||  ||||||| ||  |||   | ||||||||||||| ||||||||||||||| |||  ||||| ||||||||||    
T  40797830 tcaagttcaactcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcatgaaccaagttcaatgaaccaattatcgaatcaagt 40797928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 44378246 - 44378331
Alignment:
Q  40 tagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaat 125  Q
    ||||||||||||| ||||||||||||| ||  ||||||| ||   || | |  |||||||||||| ||||||||||||||||||||    
T  44378246 tagctcaagttcaactcatttatttaacgagcttaattttcaacccaaattcaactcatttggttcatgaaccaagttcaacgaat 44378331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 48802645 - 48802596
Alignment:
Q  15 tgaactaaacgagttgagctattcatagctcaagttcagctcatttattt 64  Q
    ||||| |||||||| || ||||||||||||||||||| ||||||||||||    
T  48802645 tgaaccaaacgagtcgaactattcatagctcaagttcggctcatttattt 48802596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 138
Target Start/End: Original strand, 13455695 - 13455795
Alignment:
Q  38 catagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaattaccgaat 137  Q
    ||||| ||||||||| ||| ||||||||| ||  |||||||  || |||   | ||||||||||||| || || |||||||||||||||||||| |||||    
T  13455695 catagttcaagttcaactcgtttatttaacgaacttaattttgagctcaagttggactcatttggttcataaatcaagttcaacgaattaattatcgaat 13455794  T
Q  138 c 138  Q
    |    
T  13455795 c 13455795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 121
Target Start/End: Complemental strand, 49083388 - 49083297
Alignment:
Q  30 gagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaac 121  Q
    |||||||  ||| ||||||| ||||||||||| |||| || |||||||| ||| |||   |  ||||||| |||||||||||||||||||||    
T  49083388 gagctatatataactcaagtacagctcatttaattaacgaatttaattttcagatcaagttcaactcattaggtttatgaaccaagttcaac 49083297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 52706271 - 52706317
Alignment:
Q  98 tttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 144  Q
    ||||||| |||||||||||| |||||| |||||||||| ||||||||    
T  52706271 tttggttcatgaaccaagtttaacgaactaattaccgagtcaagttc 52706317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 9469772 - 9469853
Alignment:
Q  39 atagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaa 120  Q
    |||| |||||||||||||||||| | || ||  ||||||| ||| |||   ||| ||||||||||| |||||||||||||||    
T  9469772 atagttcaagttcagctcatttaatcaacgaacttaattttcagctcaagtttggctcatttggttcatgaaccaagttcaa 9469853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 36543776 - 36543857
Alignment:
Q  39 atagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaa 120  Q
    |||| |||||||||||||||||| |||| ||  ||||||| ||| |||   ||| || |||||||| |||||||||||||||    
T  36543776 atagttcaagttcagctcatttaattaacgaacttaattttcagctcaagtttggcttatttggttcatgaaccaagttcaa 36543857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 5762673 - 5762605
Alignment:
Q  56 catttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaa 124  Q
    ||||||||||| || |||||||| ||| ||| | |  |||||||||||| ||||||||||||| |||||    
T  5762673 catttatttaacgaatttaattttcagctcaaactcaactcatttggttcatgaaccaagttcgacgaa 5762605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 9874298 - 9874254
Alignment:
Q  94 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    ||||||||||| ||| ||||| ||||||||||||||||| |||||    
T  9874298 ctcatttggttcatgtaccaatttcaacgaattaattactgaatc 9874254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 19455248 - 19455212
Alignment:
Q  94 ctcatttggtttatgaaccaagttcaacgaattaatt 130  Q
    |||||||| || |||||||||||||||||||||||||    
T  19455248 ctcatttgattcatgaaccaagttcaacgaattaatt 19455212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 38791742 - 38791778
Alignment:
Q  94 ctcatttggtttatgaaccaagttcaacgaattaatt 130  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  38791742 ctcatttggttcatgaaccaagttcaacgagttaatt 38791778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 39802940 - 39802823
Alignment:
Q  11 ctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaa 110  Q
    ||||||||| |||||| | ||||||| |||||||||||||| |||||||||||||| ||  ||||||| ||  |||   | ||||||||||||| |||||    
T  39802940 ctcatgaaccaaacgaatcgagctatacatagctcaagttcggctcatttatttaacgaacttaattttcaactcaagttcgactcatttggttcatgaa 39802841  T
Q  111 ccaagttcaacgaattaa 128  Q
    ||| ||||||||||||||    
T  39802840 ccatgttcaacgaattaa 39802823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 15306458 - 15306593
Alignment:
Q  9 agctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattga-ctcatttggtttat 107  Q
    ||||||||||| || ||||| || ||||  | ||||||||||| |||||||||||||||||  ||||||| | | ||| | || | ||||||||||| ||    
T  15306458 agctcatgaaccaatcgagtcgaactatatacagctcaagttcggctcatttatttaatgaacttaattttccgctca-agttcagctcatttggttcat 15306556  T
Q  108 gaaccaagttcaacgaattaattaccgaatcaagttc 144  Q
    ||||||||||||| |||||||||| |||||| |||||    
T  15306557 gaaccaagttcaatgaattaattatcgaatcgagttc 15306593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 31869591 - 31869694
Alignment:
Q  41 agctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaattaccgaatcaa 140  Q
    ||||||||||| |||||||||||||| ||  ||||||| ||| | |   | | ||||||||||| |||||||||||||||||| ||||||  ||||||||    
T  31869591 agctcaagttcggctcatttatttaacgaacttaattttcagcttaagttcggctcatttggttcatgaaccaagttcaacgatttaattgtcgaatcaa 31869690  T
Q  141 gttc 144  Q
    ||||    
T  31869691 gttc 31869694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 50447309 - 50447435
Alignment:
Q  12 tcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaac 111  Q
    |||||||| |||||||| |||  |  ||||| ||||||||| ||||||||||||| ||  |||||||  ||||||   | | ||||||||||| || |||    
T  50447309 tcatgaaccaaacgagtcgagtcaaacatagttcaagttcaactcatttatttaacgaacttaattttaagttcaagttcggctcatttggttcataaac 50447408  T
Q  112 caagttcaacgaattaattaccgaatc 138  Q
    |||||| ||||||||||||| ||||||    
T  50447409 caagtttaacgaattaattatcgaatc 50447435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 29677691 - 29677579
Alignment:
Q  12 tcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaac 111  Q
    |||||||  |||||||| || |||| | ||| ||||||||||||||||||||||| ||  ||||||| ||  |||   | |||||||||||||  |||||    
T  29677691 tcatgaagcaaacgagtcgaactatacttagttcaagttcagctcatttatttaaagagcttaattttcaactcaagttcgactcatttggttcgtgaac 29677592  T
Q  112 caagttcaacgaa 124  Q
    |||||||||||||    
T  29677591 caagttcaacgaa 29677579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 31816617 - 31816661
Alignment:
Q  93 actcatttggtttatgaaccaagttcaacgaattaattaccgaat 137  Q
    |||||||||||| |||||||||||||||||||| |||||||||||    
T  31816617 actcatttggttcatgaaccaagttcaacgaatcaattaccgaat 31816661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 7841674 - 7841717
Alignment:
Q  95 tcatttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    |||||||||| |||||||||||||||||||||||||| ||||||    
T  7841674 tcatttggttcatgaaccaagttcaacgaattaattatcgaatc 7841717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 48575166 - 48575127
Alignment:
Q  98 tttggtttatgaaccaagttcaacgaattaattaccgaat 137  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  48575166 tttggttcatgaaccaagttcaacgaattaattaccgaat 48575127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 7996019 - 7996065
Alignment:
Q  92 gactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    |||||||| ||||||||||||||||||||||||| ||||| ||||||    
T  7996019 gactcattaggtttatgaaccaagttcaacgaatcaattatcgaatc 7996065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 14796590 - 14796688
Alignment:
Q  46 aagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 144  Q
    ||||||| ||||||||||||| ||  |||||||| ||||||   |  ||| | |||||| |||||||| ||||||||||||||||| ||| ||||||||    
T  14796590 aagttcaactcatttatttaacgaacttaatttaaagttcaagttcaacttaattggttcatgaaccacgttcaacgaattaattatcgagtcaagttc 14796688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 14805464 - 14805562
Alignment:
Q  46 aagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 144  Q
    ||||||| ||||||||||||| ||  |||||||| ||||||   |  ||| | |||||| |||||||| ||||||||||||||||| ||| ||||||||    
T  14805464 aagttcaactcatttatttaacgaacttaatttaaagttcaagttcaacttaattggttcatgaaccacgttcaacgaattaattatcgagtcaagttc 14805562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 28006318 - 28006444
Alignment:
Q  12 tcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaac 111  Q
    ||||||||||||||||| || | || |  | |||||||||  ||||||||||||| ||  ||||||| ||  |||   | ||||||||||||| ||||||    
T  28006318 tcatgaactaaacgagtcgaaccatactcaactcaagttcgactcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcatgaac 28006417  T
Q  112 caagttcaacgaattaattaccgaatc 138  Q
    |||||||||||| | ||||| ||||||    
T  28006418 caagttcaacgagtcaattatcgaatc 28006444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 25125030 - 25124938
Alignment:
Q  39 atagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaatta 131  Q
    ||||||||||||||||||| ||| || | ||  ||||||| ||| |||   | | ||||||||||| |||||||||||||||||||| |||||    
T  25125030 atagctcaagttcagctcaattagttcacgaaattaattttcagctcaagttcggctcatttggttcatgaaccaagttcaacgaatcaatta 25124938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 27076605 - 27076557
Alignment:
Q  94 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagt 142  Q
    ||||||| ||| ||| |||||||||||||||||||||| ||||||||||    
T  27076605 ctcatttagttcatggaccaagttcaacgaattaattatcgaatcaagt 27076557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 29113697 - 29113645
Alignment:
Q  11 ctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatt 63  Q
    ||||||||| ||||||||||| |||| ||||||||||||||| ||| ||||||    
T  29113697 ctcatgaaccaaacgagttgaactatacatagctcaagttcacctcttttatt 29113645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 42916287 - 42916160
Alignment:
Q  11 ctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaa 110  Q
    ||||||||| |||||||| || ||||  || | |||||||||||||| ||| |||  ||  ||||||| ||| |||   | | ||||||||||| |||||    
T  42916287 ctcatgaaccaaacgagtcgacctatatatggttcaagttcagctcaattagttagcgaacttaattttcagctcaagttcggctcatttggttcatgaa 42916188  T
Q  111 ccaagttcaacgaattaattaccgaatc 138  Q
    |||||||| |||||| ||||| ||||||    
T  42916187 ccaagttcgacgaatcaattatcgaatc 42916160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 42937045 - 42937160
Alignment:
Q  15 tgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaa 114  Q
    ||||| ||||||||||| |||| |||||||||||||||||||| ||| || | ||  |||||||  || |||   | | |||||||| || |||||||||    
T  42937045 tgaaccaaacgagttgaactatacatagctcaagttcagctcaattagttgacgaacttaattttaagctcaagttcggctcatttgattcatgaaccaa 42937144  T
Q  115 gttcaacgaattaatt 130  Q
    |||| |||||| ||||    
T  42937145 gttcgacgaatcaatt 42937160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 19508582 - 19508628
Alignment:
Q  98 tttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 144  Q
    ||||||| ||||||||||||||||||| |||||||||| || |||||    
T  19508582 tttggttcatgaaccaagttcaacgaactaattaccgagtcgagttc 19508628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 20349196 - 20349242
Alignment:
Q  94 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatcaa 140  Q
    |||||||||| |||||| |||||||||||||||||||| ||| ||||    
T  20349196 ctcatttggtatatgaatcaagttcaacgaattaattatcgagtcaa 20349242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 45581099 - 45581049
Alignment:
Q  93 actcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagtt 143  Q
    |||||||||||| ||||||||||||||||||  |||||| |||||| ||||    
T  45581099 actcatttggttcatgaaccaagttcaacgagataattatcgaatcgagtt 45581049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 24575960 - 24576005
Alignment:
Q  95 tcatttggtttatgaaccaagttcaacgaattaattaccgaatcaa 140  Q
    |||||||||| |||||||||||||||||| | ||||| ||||||||    
T  24575960 tcatttggttcatgaaccaagttcaacgagtcaattatcgaatcaa 24576005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 45653521 - 45653472
Alignment:
Q  94 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagtt 143  Q
    ||||||||||| ||||||||||||||||||| |||||  |||||| ||||    
T  45653521 ctcatttggttcatgaaccaagttcaacgaaataattgtcgaatcgagtt 45653472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 12224665 - 12224629
Alignment:
Q  94 ctcatttggtttatgaaccaagttcaacgaattaatt 130  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  12224665 ctcatttggttcatgaaccaagttcaacgagttaatt 12224629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 35810768 - 35810804
Alignment:
Q  94 ctcatttggtttatgaaccaagttcaacgaattaatt 130  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  35810768 ctcatttggttcatgaaccaagttcaacgaatcaatt 35810804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 28242548 - 28242683
Alignment:
Q  9 agctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattga-ctcatttggtttat 107  Q
    ||||||||||| || ||||| || ||||  | ||||||||||||| |||||||||||| || |||||||| ||| ||| |||| | ||||||||||| ||    
T  28242548 agctcatgaaccaaccgagtcgaactatatacagctcaagttcagatcatttatttaacgaatttaattttcagctca-aattcagctcatttggttcat 28242646  T
Q  108 gaaccaagttcaacgaattaattaccgaatcaagttc 144  Q
    ||||||| |||||||| ||||||  ||||||||||||    
T  28242647 gaaccaaattcaacgagttaattgtcgaatcaagttc 28242683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 9505262 - 9505161
Alignment:
Q  43 ctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagt 142  Q
    |||||||||||||||||||||||| ||  ||||||| ||| |||   |  |||||||||||| |||||||||||||||||| ||||||  |||||| |||    
T  9505262 ctcaagttcagctcatttatttaacgaacttaattttcagctcaagttcaactcatttggttcatgaaccaagttcaacgagttaattgtcgaatcgagt 9505163  T
Q  143 tc 144  Q
    ||    
T  9505162 tc 9505161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 18074547 - 18074663
Alignment:
Q  15 tgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaa 114  Q
    |||||||||| ||||||  |||  ||||||||| ||||||||||||| |||| ||  ||||||| ||||||| | |  |||||||| ||| ||||| |||    
T  18074547 tgaactaaacaagttgaattatatatagctcaatttcagctcatttagttaacgaacttaattttcagttcaaattcaactcatttagttcatgaaacaa 18074646  T
Q  115 gttcaacgaattaatta 131  Q
     ||||||||||||||||    
T  18074647 attcaacgaattaatta 18074663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 52934777 - 52934912
Alignment:
Q  9 agctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattga-ctcatttggtttat 107  Q
    ||||||||||| || ||||| || ||||  |||| |||||||| |||||||||||||| ||  ||||||| | | ||| | || | ||||||||||| ||    
T  52934777 agctcatgaaccaatcgagtcgaactatatatagatcaagttcggctcatttatttaacgaacttaattttctgctca-agttcagctcatttggttcat 52934875  T
Q  108 gaaccaagttcaacgaattaattaccgaatcaagttc 144  Q
    ||||||||||||| || ||||||| |||||| |||||    
T  52934876 gaaccaagttcaatgagttaattatcgaatcgagttc 52934912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 31589668 - 31589718
Alignment:
Q  90 ttgactcatttggtttatgaaccaagttcaacgaattaattaccgaatcaa 140  Q
    |||||| |||||||||||||||||||| ||| ||||| |||||||||||||    
T  31589668 ttgacttatttggtttatgaaccaagtccaatgaattgattaccgaatcaa 31589718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 130
Target Start/End: Original strand, 52199426 - 52199515
Alignment:
Q  41 agctcaagttcagctcatttatttaatgattttaatttacagttcacaattga-ctcatttggtttatgaaccaagttcaacgaattaatt 130  Q
    |||||||||||||||||||| ||||| ||  ||||||| ||| ||| | || | ||| ||||||| |||||||||||||||||||||||||    
T  52199426 agctcaagttcagctcatttgtttaacgaacttaattttcagctca-agttcagctcgtttggttcatgaaccaagttcaacgaattaatt 52199515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 54393533 - 54393497
Alignment:
Q  94 ctcatttggtttatgaaccaagttcaacgaattaatt 130  Q
    |||||||||||||||||||||||||||||||| ||||    
T  54393533 ctcatttggtttatgaaccaagttcaacgaatcaatt 54393497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 124
Target Start/End: Complemental strand, 9195910 - 9195879
Alignment:
Q  93 actcatttggtttatgaaccaagttcaacgaa 124  Q
    ||||||||||||||||||||||||||||||||    
T  9195910 actcatttggtttatgaaccaagttcaacgaa 9195879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 138
Target Start/End: Original strand, 12710701 - 12710796
Alignment:
Q  43 ctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    |||||||||  ||||||||||||| ||  ||||||| ||  |||   | ||||||||||||| |||||||||||||||||| | ||||| ||||||    
T  12710701 ctcaagttcgactcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatc 12710796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 138
Target Start/End: Complemental strand, 20550342 - 20550248
Alignment:
Q  44 tcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    |||||| || ||||||||||||| || |||||||| ||  |||   | |||||||||||||  ||||||||||||||| ||| ||||| ||||||    
T  20550342 tcaagtacaactcatttatttaacgaatttaattttcaactcatgttcgactcatttggttcgtgaaccaagttcaacaaatcaattatcgaatc 20550248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 138
Target Start/End: Complemental strand, 30662303 - 30662177
Alignment:
Q  12 tcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaac 111  Q
    |||||||| |||||||| || |||| |  | |||||||||  ||||||||||||| ||  ||||||| ||  |||   | |||||||||| || ||||||    
T  30662303 tcatgaaccaaacgagtcgaactatactcaactcaagttcgactcatttatttaacgagcttaattttcaactcaagttcgactcatttgattcatgaac 30662204  T
Q  112 caagttcaacgaattaattaccgaatc 138  Q
    |||||||||||| | ||||| ||||||    
T  30662203 caagttcaacgagtcaattatcgaatc 30662177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 33438823 - 33438785
Alignment:
Q  92 gactcatttggtttatgaaccaagttcaacgaattaatt 130  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  33438823 gactcatttggttcatgaaccaagttcaacgaatcaatt 33438785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 33896797 - 33896846
Alignment:
Q  11 ctcatgaactaaacgagttgagctattcatagctcaagttcagctcattt 60  Q
    |||||||||||||||||| || ||||  ||| ||||||||||||||||||    
T  33896797 ctcatgaactaaacgagtcgaactatatataactcaagttcagctcattt 33896846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 10493953 - 10494065
Alignment:
Q  12 tcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaac 111  Q
    |||||||| |||||||| || |||| | ||| ||||||||||||||||||||||| ||  ||||||| ||  |||   | |||||||||||||| |||||    
T  10493953 tcatgaaccaaacgagtcgaactatacttagttcaagttcagctcatttatttaacgagcttaattttcaactcaagttcgactcatttggtttgtgaac 10494052  T
Q  112 caagttcaacgaa 124  Q
    |||||||||||||    
T  10494053 caagttcaacgaa 10494065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 32945194 - 32945062
Alignment:
Q  11 ctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaa 110  Q
    ||||||||| ||||||||||| |||| |||| ||| ||||| |||||||||||| | ||  |||||||     |||   | ||||||||||||| |||||    
T  32945194 ctcatgaacaaaacgagttgaactatgcataactccagttcggctcatttatttgacgagcttaatttttgactcaagttcgactcatttggttcatgaa 32945095  T
Q  111 ccaagttcaacgaattaattaccgaatcaagtt 143  Q
    ||||||| ||||||| |||||||||||| ||||    
T  32945094 ccaagtttaacgaatcaattaccgaatcgagtt 32945062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 143
Target Start/End: Original strand, 10327896 - 10328029
Alignment:
Q  10 gctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatga 109  Q
    |||||||||| |||||||| || |||| ||||||||||||| |  ||||||||||   || |||||| | |   |||   |||| |||||||||| ||||    
T  10327896 gctcatgaacaaaacgagtcgaactatacatagctcaagtttaattcatttatttgtcgagtttaatattcgactcaagtttgattcatttggttcatga 10327995  T
Q  110 accaagttcaacgaattaattaccgaatcaagtt 143  Q
    | |||||||||||||| |||||||||||| ||||    
T  10327996 atcaagttcaacgaatcaattaccgaatcgagtt 10328029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 5382917 - 5382871
Alignment:
Q  92 gactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||||||    
T  5382917 gactcgtttggttcatgaatcaagttcaacgaattaattaccgaatc 5382871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 41783375 - 41783425
Alignment:
Q  94 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 144  Q
    ||||||||||| ||||||||||||||||||| |||||||||| || |||||    
T  41783375 ctcatttggttcatgaaccaagttcaacgaactaattaccgagtcgagttc 41783425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 140
Target Start/End: Original strand, 20188968 - 20189069
Alignment:
Q  39 atagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    ||||||||||||||||||| ||| || | ||  |||||||  ||||||   | | ||||||||||| ||||||||||||| |||||| ||||| ||||||    
T  20188968 atagctcaagttcagctcaattagttgacgaacttaatttttagttcaagttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaatc 20189067  T
Q  139 aa 140  Q
    ||    
T  20189068 aa 20189069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 38523006 - 38522925
Alignment:
Q  39 atagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaa 120  Q
    |||| |||||||||||||||||| |||| ||  ||||||| ||| |||   ||| ||||||||||| |||||||||||||||    
T  38523006 atagttcaagttcagctcatttaattaacgaacttaattttcagctcaagtttggctcatttggttcatgaaccaagttcaa 38522925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 130
Target Start/End: Complemental strand, 1840828 - 1840741
Alignment:
Q  43 ctcaagttcagctcatttatttaatgattttaatttacagttcacaattga-ctcatttggtttatgaaccaagttcaacgaattaatt 130  Q
    |||||||||||||||||||||| | ||  ||||||| ||| ||| | || | ||||||||||| |||||||||||||||||| ||||||    
T  1840828 ctcaagttcagctcatttatttcacgaacttaattttcagctca-agttcagctcatttggttcatgaaccaagttcaacgagttaatt 1840741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 19282204 - 19282154
Alignment:
Q  94 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 144  Q
    ||||||||||| |||||||||||||||||| ||||||  ||||| ||||||    
T  19282204 ctcatttggttcatgaaccaagttcaacgagttaattgtcgaatgaagttc 19282154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 26218101 - 26218147
Alignment:
Q  98 tttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 144  Q
    ||||||| ||||||||||||||||||| |||||||||| || |||||    
T  26218101 tttggttcatgaaccaagttcaacgaactaattaccgagtcgagttc 26218147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 36523719 - 36523773
Alignment:
Q  12 tcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaa 66  Q
    |||||||| |||||| |  | |||| |||||||||||||||||||||||||||||    
T  36523719 tcatgaaccaaacgaatcaaactatacatagctcaagttcagctcatttatttaa 36523773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 36523803 - 36523853
Alignment:
Q  92 gactcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagt 142  Q
    ||||||||||||| ||||||||||||||| ||||  |||| ||||||||||    
T  36523803 gactcatttggttcatgaaccaagttcaatgaatctattatcgaatcaagt 36523853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 17168533 - 17168489
Alignment:
Q  94 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    |||||||||||| ||||||||||||||| |||||| || ||||||    
T  17168533 ctcatttggtttgtgaaccaagttcaacaaattaaatatcgaatc 17168489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 26298357 - 26298405
Alignment:
Q  90 ttgactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    |||||||||| |||| ||||| |||||||||||||| ||||| ||||||    
T  26298357 ttgactcattaggttcatgaatcaagttcaacgaatcaattatcgaatc 26298405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 18099784 - 18099910
Alignment:
Q  12 tcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaac 111  Q
    |||||||| |||||| |||| |||| ||||||||||||||| ||||||||||||| ||  ||||||   |  ||| | | |||||||||||||  |||||    
T  18099784 tcatgaaccaaacgaattgaactatgcatagctcaagttcatctcatttatttaacgaacttaattgttaactcaaattcgactcatttggttcgtgaac 18099883  T
Q  112 caagttcaacgaattaattaccgaatc 138  Q
    ||||||||||||||  |||| ||||||    
T  18099884 caagttcaacgaatccattatcgaatc 18099910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 138
Target Start/End: Complemental strand, 3081890 - 3081764
Alignment:
Q  12 tcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaac 111  Q
    |||||||| |||||||| || |||| | ||| |||||||||||||||||| |||| ||  ||||||| ||  |||   | |||||||||||||  |||||    
T  3081890 tcatgaaccaaacgagtcgaactatacttagttcaagttcagctcatttaattaacgagcttaattttcaactcaagttcgactcatttggttcgtgaac 3081791  T
Q  112 caagttcaacgaattaattaccgaatc 138  Q
    |||||||||||||  ||||| ||||||    
T  3081790 caagttcaacgaaccaattatcgaatc 3081764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 140
Target Start/End: Complemental strand, 10961941 - 10961840
Alignment:
Q  39 atagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    |||| |||||||||||||| ||| || | ||  ||||||| ||| ||| | | ||||||||||||| |||||||||||||||||||| ||||  ||||||    
T  10961941 atagttcaagttcagctcaattagttgacgaacttaattttcagctcaaattcgactcatttggttcatgaaccaagttcaacgaatcaattgtcgaatc 10961842  T
Q  139 aa 140  Q
    ||    
T  10961841 aa 10961840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 7437272 - 7437384
Alignment:
Q  12 tcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaac 111  Q
    |||||||| |||||||| || |||| | ||| ||||||||||||||||||||||| ||  ||||||| ||  | |   | |||||||||||||  |||||    
T  7437272 tcatgaaccaaacgagtcgaactatacttagttcaagttcagctcatttatttaacgagcttaattttcaactaaagttcgactcatttggttcgtgaac 7437371  T
Q  112 caagttcaacgaa 124  Q
    |||||||||||||    
T  7437372 caagttcaacgaa 7437384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 5640421 - 5640298
Alignment:
Q  15 tgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaa 114  Q
    ||||| |||||||| || ||||  |||| |||||||||||||| ||| || | ||  ||||||| |||||||   | | ||||||||||| |||||||||    
T  5640421 tgaaccaaacgagtcgaactatatatagttcaagttcagctcaattagttgacgaacttaattttcagttcaagttcggctcatttggttcatgaaccaa 5640322  T
Q  115 gttcaacgaattaattaccgaatc 138  Q
    |||| |||||| ||||| ||||||    
T  5640321 gttcgacgaatcaattatcgaatc 5640298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 17441207 - 17441257
Alignment:
Q  93 actcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagtt 143  Q
    |||||||||||| |||||| ||||||||||||||||||||| |||| ||||    
T  17441207 actcatttggttcatgaactaagttcaacgaattaattaccaaatcgagtt 17441257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 18095487 - 18095613
Alignment:
Q  12 tcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaac 111  Q
    |||||||| ||| || |||| |||| ||||||||||||||| ||||||||||||| ||  |||||||  |  |||   | |||| ||||||||  |||||    
T  18095487 tcatgaacaaaatgaattgaactatgcatagctcaagttcatctcatttatttaacgaacttaatttttaactcaagttcgacttatttggttcgtgaac 18095586  T
Q  112 caagttcaacgaattaattaccgaatc 138  Q
    ||||||||||||||  |||| ||||||    
T  18095587 caagttcaacgaatccattatcgaatc 18095613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 11460102 - 11460054
Alignment:
Q  96 catttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 144  Q
    ||||||||| |||||||||||||||||||| ||||| |||||| |||||    
T  11460102 catttggttcatgaaccaagttcaacgaatcaattatcgaatcgagttc 11460054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 13311990 - 13312116
Alignment:
Q  12 tcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaac 111  Q
    |||||||| ||||||||||| | || |  || ||||||||| ||||||||||||| ||  ||||||| ||  |||   | ||||||||||||| ||||||    
T  13311990 tcatgaaccaaacgagttgaaccatactaagttcaagttcaactcatttatttaacgaacttaattttcaactcaagttcgactcatttggttcatgaac 13312089  T
Q  112 caagttcaacgaattaattaccgaatc 138  Q
    ||||| ||| |||  ||||| ||||||    
T  13312090 caagtccaatgaaccaattatcgaatc 13312116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 33110512 - 33110558
Alignment:
Q  98 tttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 144  Q
    ||||||| ||||||||||||||||||| |||||||||| || |||||    
T  33110512 tttggttcatgaaccaagttcaacgaactaattaccgagtcgagttc 33110558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 6999317 - 6999361
Alignment:
Q  94 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    ||||||| ||| || ||||||||||||||||||||||| ||||||    
T  6999317 ctcatttagttcattaaccaagttcaacgaattaattatcgaatc 6999361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 10474506 - 10474454
Alignment:
Q  14 atgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaa 66  Q
    |||||| ||||||||||| || | ||||||||||||||| |||||||| ||||    
T  10474506 atgaaccaaacgagttgaactttgcatagctcaagttcaactcatttagttaa 10474454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 11703614 - 11703570
Alignment:
Q  96 catttggtttatgaaccaagttcaacgaattaattaccgaatcaa 140  Q
    ||||||||| || ||| ||||||||| ||||||||||||||||||    
T  11703614 catttggttcataaactaagttcaacaaattaattaccgaatcaa 11703570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 222399 - 222268
Alignment:
Q  11 ctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattga-ctcatttggtttatga 109  Q
    ||||||||| || ||||| || ||||  | |||||||||||||||||||| ||||| || |||||||| ||||||| | || | ||| ||||||| ||||    
T  222399 ctcatgaaccaaccgagtcgaactatataaagctcaagttcagctcatttgtttaacgaatttaattttcagttca-agttcagctcgtttggttcatga 222301  T
Q  110 accaagttcaacgaattaattaccgaatcaagt 142  Q
    ||||| |||||||| ||||||  ||||||||||    
T  222300 accaaattcaacgagttaattgtcgaatcaagt 222268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 18250085 - 18250039
Alignment:
Q  92 gactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    ||||||||||||| |||||||||||||||||||| ||||| ||||||    
T  18250085 gactcatttggttcatgaaccaagttcaacgaatcaattatcgaatc 18250039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 143
Target Start/End: Complemental strand, 21760726 - 21760624
Alignment:
Q  41 agctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaattaccgaatcaa 140  Q
    |||||||||||| ||||||||||||| || |||| ||| ||  |||   | |||||||||||||  ||||| ||||||||||||| ||||| |||||| |    
T  21760726 agctcaagttcaactcatttatttaacgagtttagttttcaactcaagttcgactcatttggttcgtgaacaaagttcaacgaatcaattatcgaatcga 21760627  T
Q  141 gtt 143  Q
    |||    
T  21760626 gtt 21760624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 49034316 - 49034270
Alignment:
Q  92 gactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    ||||||||||||| |||||||||||||||||||  ||||||||||||    
T  49034316 gactcatttggttcatgaaccaagttcaacgaaacaattaccgaatc 49034270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 24128589 - 24128540
Alignment:
Q  95 tcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 144  Q
    |||||||||| ||||||||| |||||||| ||||||| ||||||||||||    
T  24128589 tcatttggttcatgaaccaaattcaacgagttaattatcgaatcaagttc 24128540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 33935480 - 33935607
Alignment:
Q  11 ctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattga-ctcatttggtttatga 109  Q
    |||||| ||||| ||||| || ||||  | |||||||||||| ||||||| ||||| ||  ||||||| ||| ||| | || | ||| ||||||| ||||    
T  33935480 ctcatggactaaccgagtcgaactatataaagctcaagttcatctcatttgtttaacgaacttaattttcagctca-agttcagctcgtttggttcatga 33935578  T
Q  110 accaagttcaacgaattaattaccgaatc 138  Q
    |||||||||||||| ||||||| ||||||    
T  33935579 accaagttcaacgagttaattatcgaatc 33935607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 11595882 - 11595836
Alignment:
Q  98 tttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 144  Q
    ||||||| ||||||||||||||||||| |||||||||| || |||||    
T  11595882 tttggttcatgaaccaagttcaacgaactaattaccgagtcgagttc 11595836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 40480136 - 40480090
Alignment:
Q  98 tttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 144  Q
    ||||||| ||||||||||||||||||| |||||||||| || |||||    
T  40480136 tttggttcatgaaccaagttcaacgaactaattaccgactcgagttc 40480090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 45055787 - 45055833
Alignment:
Q  98 tttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 144  Q
    ||||||| ||||||||||||||||||| |||||||||| || |||||    
T  45055787 tttggttcatgaaccaagttcaacgaactaattaccgagtcgagttc 45055833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 46573704 - 46573658
Alignment:
Q  92 gactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    ||||||||||||| |||||||||||||||||| | ||||| ||||||    
T  46573704 gactcatttggttcatgaaccaagttcaacgagtcaattatcgaatc 46573658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 35543648 - 35543603
Alignment:
Q  92 gactcatttggtttatgaaccaagttcaacgaattaattaccgaat 137  Q
    ||||||||| ||| |||||||||||||||||||| ||||| |||||    
T  35543648 gactcatttagttcatgaaccaagttcaacgaatcaattatcgaat 35543603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 29037870 - 29037826
Alignment:
Q  94 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    ||||||||||| |||||| ||||||| | ||||||||||||||||    
T  29037870 ctcatttggttcatgaacaaagttcagcaaattaattaccgaatc 29037826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 32357016 - 32357060
Alignment:
Q  94 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    ||||||| ||| ||||| |||||||||||||||||||| ||||||    
T  32357016 ctcatttagttcatgaatcaagttcaacgaattaattatcgaatc 32357060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 36472494 - 36472538
Alignment:
Q  94 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    ||||||||||| |||||||||||||||||||| | ||| ||||||    
T  36472494 ctcatttggttcatgaaccaagttcaacgaatcatttatcgaatc 36472538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 48634501 - 48634537
Alignment:
Q  93 actcatttggtttatgaaccaagttcaacgaattaat 129  Q
    |||||||||||| |||||||||||||||||| |||||    
T  48634501 actcatttggttcatgaaccaagttcaacgagttaat 48634537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 21084 - 21181
Alignment:
Q  40 tagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    ||||||||||||| ||||||||||||||||  ||||||| ||  |||   | ||||| ||||||| |||||||||||||||||||| ||||| ||||||    
T  21084 tagctcaagttcaactcatttatttaatgagcttaattttcaactcaagttcgactc-tttggttcatgaaccaagttcaacgaatcaattatcgaatc 21181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 13829927 - 13829972
Alignment:
Q  93 actcatttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||    
T  13829927 actcatttggtttatgaaccaagttcaacgaatcaattatcgaatc 13829972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 40458889 - 40458998
Alignment:
Q  12 tcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaac 111  Q
    |||||||| |||||||| || |||| | ||| ||||||||||||||||||||||| ||  ||||||| ||  |||   | |||||||||||||  |||||    
T  40458889 tcatgaaccaaacgagtcgaactatacttagttcaagttcagctcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcgtgaac 40458988  T
Q  112 caagttcaac 121  Q
    ||||||||||    
T  40458989 caagttcaac 40458998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 143
Target Start/End: Complemental strand, 24844804 - 24844707
Alignment:
Q  46 aagttcagctcatttatttaatgattttaatttacagttcacaattga-ctcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagtt 143  Q
    ||||||||||||||||||||  || |||||||| ||| ||| | || | ||||||||||| ||||||||||||||||||  ||||| ||||||| ||||    
T  24844804 aagttcagctcatttatttatcgaatttaattttcagctca-agttcagctcatttggttcatgaaccaagttcaacgagataattgccgaatcgagtt 24844707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 20203808 - 20203768
Alignment:
Q  90 ttgactcatttggtttatgaaccaagttcaacgaattaatt 130  Q
    ||||||||||||||| |||||||||||||||||||| ||||    
T  20203808 ttgactcatttggttcatgaaccaagttcaacgaatcaatt 20203768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 143
Target Start/End: Complemental strand, 3409331 - 3409229
Alignment:
Q  41 agctcaagttcagctcatttatttaatgattttaatttacagttcacaattgact-catttggtttatgaaccaagttcaacgaattaattaccgaatca 139  Q
    ||||||| |||||||||||||||||| ||  ||||||| ||| ||| | || | | ||||||||| |||||||||||||||||| ||||||  ||||||     
T  3409331 agctcaaattcagctcatttatttaacgaacttaattttcagctca-agttcagttcatttggttcatgaaccaagttcaacgagttaattgtcgaatcg 3409233  T
Q  140 agtt 143  Q
    ||||    
T  3409232 agtt 3409229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 131
Target Start/End: Complemental strand, 11007112 - 11007025
Alignment:
Q  44 tcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaattaatta 131  Q
    ||||||||| ||||||||||||| ||  ||||||| ||  |||   | |||||||||||||  ||||||||||||||||||| |||||    
T  11007112 tcaagttcaactcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcgtgaaccaagttcaacgaatcaatta 11007025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 31000891 - 31000934
Alignment:
Q  95 tcatttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    |||||||||| ||||| |||||||| ||||||||||||||||||    
T  31000891 tcatttggttcatgaatcaagttcatcgaattaattaccgaatc 31000934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 2647060 - 2647014
Alignment:
Q  98 tttggtttatgaaccaagttcaacgaattaattaccgaatcaagttc 144  Q
    ||||||| ||||||||||||||||||| |||||||||| || |||||    
T  2647060 tttggttcatgaaccaagttcaacgaactaattaccgagtcgagttc 2647014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 27464664 - 27464614
Alignment:
Q  92 gactcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagt 142  Q
    ||||||||||||| ||||||||| |||||| ||| ||||| ||||||||||    
T  27464664 gactcatttggttcatgaaccaaattcaacaaatcaattatcgaatcaagt 27464614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 26436321 - 26436438
Alignment:
Q  11 ctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaa 110  Q
    |||||||||  ||||||| || ||||   |||||||||||||||||||||| |||| ||  ||||||| ||| ||||  |   ||| || |||| |||||    
T  26436321 ctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcatttaattaacgaacttaattttcagctcacgttcagctcgttaggttcatgaa 26436420  T
Q  111 ccaagttcaacgaattaa 128  Q
    |||||||||||| |||||    
T  26436421 ccaagttcaacggattaa 26436438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 30713206 - 30713250
Alignment:
Q  94 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    ||||||||||| ||||||||||||| |||||| ||||| ||||||    
T  30713206 ctcatttggttcatgaaccaagttcgacgaatcaattatcgaatc 30713250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0444 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 911 - 826
Alignment:
Q  40 tagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaaccaagttcaacgaat 125  Q
    ||||||||||||| ||||||||||||| ||  ||||||| ||   || | |  |||||||||||| ||||||||||||||||||||    
T  911 tagctcaagttcaactcatttatttaacgagcttaattttcaacccaaattcaactcatttggttcatgaaccaagttcaacgaat 826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 43384843 - 43384888
Alignment:
Q  93 actcatttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    |||||||||||| ||||||||| |||||||||||||||| ||||||    
T  43384843 actcatttggttcatgaaccaacttcaacgaattaattatcgaatc 43384888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 140
Target Start/End: Original strand, 22564059 - 22564102
Alignment:
Q  97 atttggtttatgaaccaagttcaacgaattaattaccgaatcaa 140  Q
    |||||||| |||||||||||||||||||  ||||||||||||||    
T  22564059 atttggttcatgaaccaagttcaacgaaacaattaccgaatcaa 22564102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 28492748 - 28492705
Alignment:
Q  97 atttggtttatgaaccaagttcaacgaattaattaccgaatcaa 140  Q
    |||||||| |||||||||||| |||||| |||||||||||||||    
T  28492748 atttggttcatgaaccaagtttaacgaactaattaccgaatcaa 28492705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 1091775 - 1091821
Alignment:
Q  92 gactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    ||||| ||||||| ||||| |||||||||||||||||||| ||||||    
T  1091775 gactcgtttggttcatgaatcaagttcaacgaattaattatcgaatc 1091821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 27189174 - 27189128
Alignment:
Q  92 gactcatttggtttatgaaccaagttcaacgaattaattaccgaatc 138  Q
    ||||||||||||| ||||||||||||| |||||| ||||| ||||||    
T  27189174 gactcatttggttcatgaaccaagttcgacgaatcaattatcgaatc 27189128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 33280067 - 33280021
Alignment:
Q  94 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatcaa 140  Q
    ||||||||||| ||||||||||||| |||||| ||||| ||||||||    
T  33280067 ctcatttggttcatgaaccaagttcgacgaatcaattatcgaatcaa 33280021  T

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Target: scaffold0223 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 14477 - 14525
Alignment:
Q  95 tcatttggtttatgaaccaagttcaacgaattaattaccgaatcaagtt 143  Q
    |||||||||| ||||||||||||||| |||| |||||||||||| ||||    
T  14477 tcatttggttcatgaaccaagttcaatgaatcaattaccgaatcgagtt 14525  T

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Target: scaffold0224 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 7481 - 7354
Alignment:
Q  11 ctcatgaactaaacgagttgagctattcatagctcaagttcagctcatttatttaatgattttaatttacagttcacaattgactcatttggtttatgaa 110  Q
    ||||||||| |||||||| || ||||  || | |||||||||||||| ||| |||  ||  ||||||| ||| |||   | | ||||||||||| |||||    
T  7481 ctcatgaaccaaacgagtcgacctatatatggttcaagttcagctcaattagttagcgaacttaattttcagctcaagttcggctcatttggttcatgaa 7382  T
Q  111 ccaagttcaacgaattaattaccgaatc 138  Q
    |||||||| |||||| ||||| ||||||    
T  7381 ccaagttcgacgaatcaattatcgaatc 7354  T

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Target: scaffold0260 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 11519 - 11565
Alignment:
Q  94 ctcatttggtttatgaaccaagttcaacgaattaattaccgaatcaa 140  Q
    |||||||||| |||||| |||||||||||||||||||| ||| ||||    
T  11519 ctcatttggtatatgaatcaagttcaacgaattaattatcgagtcaa 11565  T

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Target: scaffold0063 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 51394 - 51350
Alignment:
Q  92 gactcatttggtttatgaaccaagttcaacgaattaattaccgaa 136  Q
    ||||||||||||| | |||| ||||||||||||||| ||||||||    
T  51394 gactcatttggttcacgaactaagttcaacgaattatttaccgaa 51350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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