View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19330_low_20 (Length: 267)
Name: NF19330_low_20
Description: NF19330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19330_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 35293650 - 35293376
Alignment:
| Q |
1 |
tagatatgtcctggtccttttccaggtcactagttcaaatgcatgatgcatgtattatctataagttgaagcccacatgtttctctaactgataggaaaa |
100 |
Q |
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| T |
35293650 |
tagatatgtcctggaccttttctaggtcactagttcaaatgcatgatgcatgtattatctataagttgaagcccacatgtttctctaactgataggaaaa |
35293551 |
T |
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| Q |
101 |
ggtaataccaccaatacatagctaatttt---------------------gtatggggactccaaaagtccttcatatccattcattatgttctaccaaa |
179 |
Q |
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| T |
35293550 |
ggtaataccaccaatacatagctaaatttacaatgtaggatactaaatttgtatggggactccaaaagtccttcatatccattcattatgttctaccaaa |
35293451 |
T |
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| Q |
180 |
ggaagtttattcgatcaaaagtcctttatatccattcatcatgttcaattgatgtccaagaatagctatggagtat |
255 |
Q |
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| T |
35293450 |
ggaagtttattcgatcaaaagtcctttatatccattcatcatgttcaattgatgtcc-agaatagctatggagtat |
35293376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 20717811 - 20717893
Alignment:
| Q |
8 |
gtcctggtccttttccaggtcactagttcaaatgcatgatgcatgtattatctataagttgaagcccacatgtttctctaact |
90 |
Q |
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| T |
20717811 |
gtcctggtccttttctaggtcactagttcaaatgcaagatgcatgtcctatctataagttgaatcccacatatttctctaact |
20717893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 20717946 - 20718008
Alignment:
| Q |
122 |
ctaattttgtatggggactccaaaagtccttcatatccattcattatgttctaccaaaggaag |
184 |
Q |
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| T |
20717946 |
ctaaatttgcattgggactccaaaagtccttcatatccactcatcatgttcgatcaaaggaag |
20718008 |
T |
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