View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19330_low_23 (Length: 249)
Name: NF19330_low_23
Description: NF19330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19330_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 13763508 - 13763287
Alignment:
| Q |
12 |
tatcaaattgcat--ctgtcatcaattggagagcatgatagagtcccaaggcttcacctatttctaccggataaatgtgaccaaactgctgcacctttgc |
109 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13763508 |
tatcaaattgcatatctgtcatcaattggagagcatgatagagtcccaaggcttcacctatttctaccggataaatgtgaccaaactgctgcacctttgc |
13763409 |
T |
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| Q |
110 |
taacacaaaagtccccaactcatcccgaacacagatgccaatacctgttcgctgaaattggtccgagaaagttgcgtctacattgcacttaaaccttttg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13763408 |
taacacaaaagtccccaactcatcccgaacacagatgccaatacctgttcgctgaaattggtccgagaaagttgcgtctacattgcacttaaacctcttg |
13763309 |
T |
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| Q |
210 |
gtactaggtgactgccactgcg |
231 |
Q |
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|||||||||||||||||||||| |
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| T |
13763308 |
gtactaggtgactgccactgcg |
13763287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 23 - 229
Target Start/End: Complemental strand, 20609137 - 20608931
Alignment:
| Q |
23 |
atctgtcatcaattggagagcatgatagagtcccaaggcttcacctatttctaccggataaatgtgaccaaactgctgcacctttgctaacacaaaagtc |
122 |
Q |
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|||| ||||| |||||||||||||||||||||||||| ||| ||| ||| |||| ||||||||||||| ||||||||||||||| |||||||||||| | |
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| T |
20609137 |
atctttcatccattggagagcatgatagagtcccaagacttaaccgattgctactggataaatgtgactaaactgctgcaccttagctaacacaaaattt |
20609038 |
T |
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| Q |
123 |
cccaactcatcccgaacacagatgccaatacctgttcgctgaaattggtccgagaaagttgcgtctacattgcacttaaaccttttggtactaggtgact |
222 |
Q |
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| T |
20609037 |
cccgtctcatcctgaacttaaacctcaatacctgtctgctgaaattggtccgagaaagccgtgtctacattgcatataaacctcctgttactaggcggct |
20608938 |
T |
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| Q |
223 |
gccactg |
229 |
Q |
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||||||| |
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| T |
20608937 |
gccactg |
20608931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 42 - 206
Target Start/End: Original strand, 42510326 - 42510490
Alignment:
| Q |
42 |
gcatgatagagtcccaaggcttcacctatttctaccggataaatgtgaccaaactgctgcacctttgctaacacaaaagtccccaactcatcccgaacac |
141 |
Q |
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|||||||| | |||||| |||||||| |||||||| ||||||| ||| ||| || |||||||| |||||||||||||| || || |||||||||| |
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| T |
42510326 |
gcatgatataatcccaaagcttcaccgatttctactagataaatatgattaaattgatgcaccttagctaacacaaaagttcctgtgtcgtcccgaacac |
42510425 |
T |
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| Q |
142 |
agatgccaatacctgttcgctgaaattggtccgagaaagttgcgtctacattgcacttaaacctt |
206 |
Q |
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| T |
42510426 |
aaatgccaatacctatgcgatggaaatgttccgagaaagccgcgtctacattgcacttaaacctt |
42510490 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 28384975 - 28384793
Alignment:
| Q |
23 |
atctgtcatcaattggagagcatgatagagtcccaaggcttcacctatttctaccggataaatgtgaccaaactgctgcacctttgctaacacaaaagtc |
122 |
Q |
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|||| ||||| |||||| ||||||||| || || || |||||||||||| | || |||||||| ||| |||| ||||||||||| || | |||||| || |
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| T |
28384975 |
atctttcatccattggatagcatgataaaggccaaatgcttcacctattgcgactggataaatatgatcaaattgctgcaccttagccagcacaaaggtt |
28384876 |
T |
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| Q |
123 |
cccaactcatcccgaacacagatgccaatacctgttcgctgaaattggtccgagaaagttgcgtctacattgcacttaaacct |
205 |
Q |
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||| ||||| |||||||| | || ||||||||||| ||||| |||||||| |||| |||||||| ||||| || ||||| |
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| T |
28384875 |
cccgcatcatctcgaacacaaacccctatacctgttcgatgaaaatggtccgaaaaagccgcgtctacgttgcatttgaacct |
28384793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 206
Target Start/End: Original strand, 26333892 - 26334078
Alignment:
| Q |
24 |
tctgtcatcaattggagagcatgatagagtcccaaggcttcacctatttctaccggataaatgtgaccaaactgctgcacctttgctaacacaaaagtcc |
123 |
Q |
| |
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||||| ||| ||||| | |||||||| | |||||| ||| ||| |||||||| |||||||| ||| ||| || |||||||| |||||||||||||| | |
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| T |
26333892 |
tctgttatccattggggggcatgatataatcccaaaactttaccgatttctactggataaatatgattaaattgatgcaccttagctaacacaaaagttc |
26333991 |
T |
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| Q |
124 |
ccaactcatcccgaacacagatgccaatacctgttcgctgaaattggtccgagaaag----ttgcgtctacattgcacttaaacctt |
206 |
Q |
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| || ||||||||||| |||||||||||||| || || || || |||||||||| |||||||||||||||||||||||| |
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| T |
26333992 |
ctgtgtcgtcccgaacacaaatgccaatacctgtgcgatggaaatgttccgagaaagccgcgcgcgtctacattgcacttaaacctt |
26334078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 38489147 - 38489329
Alignment:
| Q |
23 |
atctgtcatcaattggagagcatgatagagtcccaaggcttcacctatttctaccggataaatgtgaccaaactgctgcacctttgctaacacaaaagtc |
122 |
Q |
| |
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|||| ||||| |||||| ||||||||| || ||||| |||||||||||| | || ||||||| ||| |||||| ||||||||| | | || ||| || |
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| T |
38489147 |
atctttcatccattggatagcatgataaaggcccaatgcttcacctattgcgactagataaatatgatcaaacttctgcaccttagacagcaaaaaggtt |
38489246 |
T |
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| Q |
123 |
cccaactcatcccgaacacagatgccaatacctgttcgctgaaattggtccgagaaagttgcgtctacattgcacttaaacct |
205 |
Q |
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||| ||||| |||||||| | | |||| ||| || ||||| |||||||| |||||||||||||| ||||| || ||||| |
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| T |
38489247 |
cccgcgtcatctcgaacacaaacccatatacttgtccgatgaaaatggtccgaaaaagttgcgtctacgttgcatttgaacct |
38489329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 22897726 - 22897544
Alignment:
| Q |
23 |
atctgtcatcaattggagagcatgatagagtcccaaggcttcacctatttctaccggataaatgtgaccaaactgctgcacctttgctaacacaaaagtc |
122 |
Q |
| |
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|||| ||||| |||||| ||||||||| || ||||| |||||||||||| | || |||||||| || ||||||||||||| || || | |||||| || |
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| T |
22897726 |
atctttcatccattggatagcatgataaaggcccaatgcttcacctattgcgacaggataaatatggtcaaactgctgcactttagccagcacaaaggtt |
22897627 |
T |
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| Q |
123 |
cccaactcatcccgaacacagatgccaatacctgttcgctgaaattggtccgagaaagttgcgtctacattgcacttaaacct |
205 |
Q |
| |
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| | ||||| |||||||| | || |||||||| || ||||| || ||||| |||| |||||||| ||||| || ||||| |
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| T |
22897626 |
ctcgcgtcatctcgaacacaaacccctatacctgtccgatgaaaatgatccgaaaaagccgcgtctacgttgcatttgaacct |
22897544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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