View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19330_low_26 (Length: 238)
Name: NF19330_low_26
Description: NF19330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19330_low_26 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 107911 - 108133
Alignment:
| Q |
1 |
ctcttgcaaccagtcctaaacacaagtgctgctgcaattctaaacctgattaatggtaattaattaccatttttgttttattgtaatggtaacaattatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
107911 |
ctcttgcaaccagtcctaaacacaagtgctgctgcaattctaaacctgattaatggtaattaattaccatttttgttttattgtaatggtaacagttatt |
108010 |
T |
|
| Q |
101 |
gttgaggtagatgagagtatatttcctgttatttttgtttgatatgacatcgatttttccccaacatccattgttgcttattgaattgtattctgttgct |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
108011 |
gttgagctagatgagagtatatttcctgttattttcgttcgatatgacatcgatttttccccaacatccattgttgattattgaattgtattctgttgct |
108110 |
T |
|
| Q |
201 |
atttcaatgaatattagcagttt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
108111 |
atttcaatgaatattagcagttt |
108133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 88416 - 88482
Alignment:
| Q |
1 |
ctcttgcaaccagtcctaaacacaagtgctgctgcaattctaaacctgattaatggtaattaattac |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
88416 |
ctcttgcaaccagtcctaaacacaagtgctgctgcaattctaaacctgattaatggtaattaattac |
88482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 88839 - 88900
Alignment:
| Q |
73 |
ttgttttattgtaatggtaacaattattgttgaggtagatgagagtatatttcctgttattt |
134 |
Q |
| |
|
|||||| |||||||| ||| || ||||||||||| | ||||||||| ||||||||||||||| |
|
|
| T |
88839 |
ttgtttaattgtaatcgtagcagttattgttgagctggatgagagtctatttcctgttattt |
88900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University