View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19330_low_4 (Length: 485)
Name: NF19330_low_4
Description: NF19330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19330_low_4 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 14 - 467
Target Start/End: Complemental strand, 28674641 - 28674188
Alignment:
| Q |
14 |
attattctttagtatattgtcaatatataacagcaagaacgaactaaagatgtgtgacaaattgtcattattctttagtgtattggtgttaatatcctta |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28674641 |
attattctttagtatattgtcaatatataacagcaagaactaactaaagaagtgtgacaaattgtcattattctttagtgtattggtgttaatatcctta |
28674542 |
T |
|
| Q |
114 |
tttccttttttagttccttgttttgatgacttgctaatgataacaaacctgcagtgatattgtgagtgagtactcaaaagaagtaaaggctcttggttat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28674541 |
tttccttttttagttccttgttttgatgacttgctaatgataacaaacctgcagtgatattgtgagtgagtactcaaaagaagtaaaggctcttggttat |
28674442 |
T |
|
| Q |
214 |
tctttgtttgagttattatcagaagctccaggtcttaatcactttcaccttaaagaaatgggtggtgctgaaaagttatttcttgtgtgtcactattacc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
28674441 |
tctttgtttgagttattatcagaagctctaggtcttaatcgctttcaccttaaagaaatgggtggtgctgaaaagttttttctcttgtgtcactattacc |
28674342 |
T |
|
| Q |
314 |
caccatgccctgagccagagttaaccataggcactacaaagcacacggacagtagctttatgacagtacttctgcaggatcatgttggtggcttacaagt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28674341 |
caccatgccctgagccagagttaaccataggcactacaaagcacacggacggtagctttatgacaatacttctgcaggatcatgttggtggcttacaagt |
28674242 |
T |
|
| Q |
414 |
tcttcatgacaatcaatgggttgatgtacctccctctcatggtgcccttgtagt |
467 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28674241 |
tcttcatgacaatcaatgggttgatgtgcctccctctcatggtgcccttgtagt |
28674188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 136 - 467
Target Start/End: Complemental strand, 28649056 - 28648725
Alignment:
| Q |
136 |
ttgatgacttgctaatgataacaaacctgcagtgatattgtgagtgagtactcaaaagaagtaaaggctcttggttattctttgtttgagttattatcag |
235 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||| ||| |||||||||||| ||| ||||| | |||||||| ||||||||| |||| |
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|
| T |
28649056 |
ttgatgacttgctaatgataacaaacttgcagtgatattgtgaatgaatacacaaaagaagtaacggcacttggatcttctttgtatgagttattgtcag |
28648957 |
T |
|
| Q |
236 |
aagctccaggtcttaatcactttcaccttaaagaaatgggtggtgctgaaaagttatttcttgtgtgtcactattacccaccatgccctgagccagagtt |
335 |
Q |
| |
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| ||| || ||||||| ||||||||||||||||||||||| |||||||| || || | | | ||||| |||| ||||||||||||||||||||||| |
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| T |
28648956 |
agtctcttggccttaatcgctttcaccttaaagaaatgggtgctgctgaaagttttttccatctatgtcattattgtccaccatgccctgagccagagtt |
28648857 |
T |
|
| Q |
336 |
aaccataggcactacaaagcacacggacagtagctttatgacagtacttctgcaggatcatgttggtggcttacaagttcttcatgacaatcaatgggtt |
435 |
Q |
| |
|
|||||| |||||| |||||| | || |||||||||| ||| ||||| |||| |||||| ||||||||||| ||||||||||| ||||||||||| || |
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|
| T |
28648856 |
aaccattggcactgtcaagcactcagatggtagctttattacaatacttttgcaagatcatattggtggcttagaagttcttcataacaatcaatggatt |
28648757 |
T |
|
| Q |
436 |
gatgtacctccctctcatggtgcccttgtagt |
467 |
Q |
| |
|
|||||| ||||| |||||| || |||||||| |
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|
| T |
28648756 |
gatgtagctcccattcatggagctcttgtagt |
28648725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 136 - 467
Target Start/End: Complemental strand, 28639749 - 28639418
Alignment:
| Q |
136 |
ttgatgacttgctaatgataacaaacctgcagtgatattgtgagtgagtactcaaaagaagtaaaggctcttggttattctttgtttgagttattatcag |
235 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||| ||| |||||||||||| ||| ||||| | |||||||| ||||||||| |||| |
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|
| T |
28639749 |
ttgatgacttgctaatgataacaaacttgcagtgatattgtgaatgaatacacaaaagaagtaacggcacttggatcttctttgtatgagttattgtcag |
28639650 |
T |
|
| Q |
236 |
aagctccaggtcttaatcactttcaccttaaagaaatgggtggtgctgaaaagttatttcttgtgtgtcactattacccaccatgccctgagccagagtt |
335 |
Q |
| |
|
| | | || ||||||| ||||||||||||||||||||||| |||||||| || || | | | ||||| ||||| ||||||||||||||||||||||| |
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|
| T |
28639649 |
agtcacttggccttaatcgctttcaccttaaagaaatgggtgctgctgaaagttttttccatctatgtcattattatccaccatgccctgagccagagtt |
28639550 |
T |
|
| Q |
336 |
aaccataggcactacaaagcacacggacagtagctttatgacagtacttctgcaggatcatgttggtggcttacaagttcttcatgacaatcaatgggtt |
435 |
Q |
| |
|
|||||| |||||| |||||| | || ||||||||| ||| || || |||| |||||| ||||||||||| ||||||||||||||||||||||| || |
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|
| T |
28639549 |
aaccattggcactgtcaagcactcagatgctagctttattacaatagttttgcaagatcatattggtggcttagaagttcttcatgacaatcaatggatt |
28639450 |
T |
|
| Q |
436 |
gatgtacctccctctcatggtgcccttgtagt |
467 |
Q |
| |
|
||||| ||||| |||||| || |||||||| |
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|
| T |
28639449 |
gatgtttctcccattcatggagctcttgtagt |
28639418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 163 - 467
Target Start/End: Complemental strand, 28670588 - 28670284
Alignment:
| Q |
163 |
tgcagtgatattgtgagtgagtactcaaaagaagtaaaggctcttggttattctttgtttgagttattatcagaagctccaggtcttaatcactttcacc |
262 |
Q |
| |
|
|||||||||||||| | ||| ||| |||||||||||| ||| ||||| | |||||||| |||||||| ||||| |||| |||||||| | || ||||| |
|
|
| T |
28670588 |
tgcagtgatattgttaatgaatacacaaaagaagtaatggcacttggatcttctttgtacgagttattgtcagaggctctcggtcttaaccgctctcacc |
28670489 |
T |
|
| Q |
263 |
ttaaagaaatgggtggtgctgaaaagttatttcttgtgtgtcactattacccaccatgccctgagccagagttaaccataggcactacaaagcacacgga |
362 |
Q |
| |
|
||||||||||||| | |||||||| || | | | | ||||| ||||| ||| ||||||||||||| |||||||| || |||||||| |||||| | || |
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|
| T |
28670488 |
ttaaagaaatgggcgctgctgaaagttttgtacatctatgtcattattatccagcatgccctgagccggagttaactattggcactaccaagcactcaga |
28670389 |
T |
|
| Q |
363 |
cagtagctttatgacagtacttctgcaggatcatgttggtggcttacaagttcttcatgacaatcaatgggttgatgtacctccctctcatggtgccctt |
462 |
Q |
| |
|
||||||||| ||||||||| |||| |||||| |||||||||||||| |||||||||||||||| ||| |||||||||||||| |||||| || ||| |
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|
| T |
28670388 |
tgctagctttattacagtacttttgcaagatcatattggtggcttacaaattcttcatgacaatcagtggattgatgtacctcccattcatggagctctt |
28670289 |
T |
|
| Q |
463 |
gtagt |
467 |
Q |
| |
|
||||| |
|
|
| T |
28670288 |
gtagt |
28670284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 163 - 446
Target Start/End: Complemental strand, 28690846 - 28690563
Alignment:
| Q |
163 |
tgcagtgatattgtgagtgagtactcaaaagaagtaaaggctcttggttattctttgtttgagttattatcagaagctccaggtcttaatcactttcacc |
262 |
Q |
| |
|
||||| |||||||||| ||| |||||| || |||||| || ||| || | | ||| |||||||||| |||||||||| ||| || || ||||||| |
|
|
| T |
28690846 |
tgcagagatattgtgattgaatactcagaaaaagtaatggtgtttgcttctacattgcttgagttattgtcagaagctctagggctaaacagatttcacc |
28690747 |
T |
|
| Q |
263 |
ttaaagaaatgggtggtgctgaaaagttatttcttgtgtgtcactattacccaccatgccctgagccagagttaaccataggcactacaaagcacacgga |
362 |
Q |
| |
|
||||||||||||| |||||||| ||| || || | |||||||||||||| ||||| ||||| || || ||||| || || | ||| || ||||| || |
|
|
| T |
28690746 |
ttaaagaaatggggtgtgctgaagggttgattgttctatgtcactattaccctccatgtcctgaacctgaattaactatgggaaataccaatcacacaga |
28690647 |
T |
|
| Q |
363 |
cagtagctttatgacagtacttctgcaggatcatgttggtggcttacaagttcttcatgacaatcaatgggttgatgtacctcc |
446 |
Q |
| |
|
|| | ||| || || ||||| |||| |||||| |||| ||||||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
28690646 |
caatgacttcataactatacttttgcaagatcatattggcggcttacaagttcttcatgacgatcaatggattgatgtaactcc |
28690563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 419
Target Start/End: Complemental strand, 49464447 - 49464341
Alignment:
| Q |
313 |
ccaccatgccctgagccagagttaaccataggcactacaaagcacacggacagtagctttatgacagtacttctgcaggatcatgttggtggcttacaag |
412 |
Q |
| |
|
||||| |||||||| || |||||||| || |||||||||||||| || || |||| ||| |||||| ||||||| || || || ||||||| | |||| |
|
|
| T |
49464447 |
ccaccgtgccctgaacctgagttaactatgggcactacaaagcatactgatagtaacttcatgacattacttctacaagaccaacttggtggtcttcaag |
49464348 |
T |
|
| Q |
413 |
ttcttca |
419 |
Q |
| |
|
||||||| |
|
|
| T |
49464347 |
ttcttca |
49464341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 446
Target Start/End: Complemental strand, 33761898 - 33761850
Alignment:
| Q |
398 |
ttggtggcttacaagttcttcatgacaatcaatgggttgatgtacctcc |
446 |
Q |
| |
|
||||||| || |||||||||||| | ||||||||||||||||| ||||| |
|
|
| T |
33761898 |
ttggtggttttcaagttcttcatcagaatcaatgggttgatgttcctcc |
33761850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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