View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19330_low_5 (Length: 473)
Name: NF19330_low_5
Description: NF19330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19330_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 12 - 462
Target Start/End: Original strand, 36883558 - 36884009
Alignment:
| Q |
12 |
tatacttcttttaaatcaacccttactttccttttacttataccctcagattacatccttagcta--gcacctaataaagtgcaacccccttcaggcttc |
109 |
Q |
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| T |
36883558 |
tatacttcttttaaatcaacccttactttccttttacttataccctcagattacatccttagctattgcacctaataaagtgcaacccccttcaggcttc |
36883657 |
T |
|
| Q |
110 |
atgccagaacatttcaatcggtgcaagttatgaaaagaatcagaacttaaaagttaaaaccacccaaaagataataaaacttctggtaattaaactattg |
209 |
Q |
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| T |
36883658 |
atgccagaacatttcaatcggtgcaagttatgaaaagaatcagaacttaaa-gttaaaaccacccaaaagataataaaacttctggtaattaaactattg |
36883756 |
T |
|
| Q |
210 |
ctcaatgccagttacaactttagccactagaatctttgcagtgacttactggaaatttaacttgattgctcttcatgaatggtctcaaaatagccaagct |
309 |
Q |
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| T |
36883757 |
ctcaatgccagttacaactttagccactagaatctttgcagtgacttactggaaatttaacttgattgctcttcatgaatggtctcaaaatagccaagct |
36883856 |
T |
|
| Q |
310 |
acagtcaccaacacgaggcgtcaaattttcatccagtagaacattggcagccttcaagttaccatgggggacaggagggcagcacgccgagtgcaaatag |
409 |
Q |
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| T |
36883857 |
acagtcaccaacacgaggcgtcaaattttcatccagtagaacattggcagccttcaagttaccatgggggacaggagggcagcacgccgagtgcaaatag |
36883956 |
T |
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| Q |
410 |
ctgaaaacatttccttgactttttagagttaagacagtattacctacaattct |
462 |
Q |
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| T |
36883957 |
ctgaaaacatttccttgactttttagagttaagacagtattacctacaattct |
36884009 |
T |
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Back To:
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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 421
Target Start/End: Original strand, 22554205 - 22554330
Alignment:
| Q |
296 |
aaaatagccaagctacagtcaccaacacgaggcgtcaaattttcatccagtagaacattggcagccttcaagttaccatgggggacaggagggcagcacg |
395 |
Q |
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||||||||||||| ||||||| |||||||| | ||| ||||||| |||||||| |||||||||||||||||| ||||| | |||||||||| || ||| |
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| T |
22554205 |
aaaatagccaagccacagtcagaaacacgagccatcaggttttcattcagtagaatattggcagccttcaagttgccatgagtgacaggaggggagaacg |
22554304 |
T |
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| Q |
396 |
ccgagtgcaaatagctgaaaacattt |
421 |
Q |
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||||||| ||||||| ||| |||| |
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| T |
22554305 |
tggagtgcagatagctgtaaatattt |
22554330 |
T |
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