View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19331_high_2 (Length: 443)
Name: NF19331_high_2
Description: NF19331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19331_high_2 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 11 - 430
Target Start/End: Complemental strand, 17228278 - 17227860
Alignment:
| Q |
11 |
atgaatcatttatacgtcagatgcaatgagtttgatagattatggtccttggttgcaaattgttaggtgttgaattcgtgggacacaacttattttttga |
110 |
Q |
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| T |
17228278 |
atgaatcatttatacgtcagatgcaatgagtttggcagattatggtccttggttgcaaattgttaggtgttgaattcgtgggacacaacttattttttga |
17228179 |
T |
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| Q |
111 |
ccattgaatacaatttgcttttttaggtggtttttcgaaaagagattgtctttctttggatattgtttggttttctatggtatggacaattacgaaacgc |
210 |
Q |
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| T |
17228178 |
ccattgaatacaatttgcttctttaggtggtttttcgaaaagagattgtctttctttgaatattgtttggttttctatggtatggacaattagaaaacgc |
17228079 |
T |
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| Q |
211 |
aattgccatattttctgccataaggatgaaaatatgcaaactttaagcaagaacattaaacttccaatttatggatggttgaaatcaaaatacactactt |
310 |
Q |
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| T |
17228078 |
aattgccatattttccagcataaggatgaaaatatgcaaactttaagcaagaagattaaacttccaatttatggatggttgaaatcaaaatacactac-t |
17227980 |
T |
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| Q |
311 |
ttaatttttaataccatgcttggaggcttcatcctcacgtcaccaatgcttattatctatctcttagaagctttgctttttcgtgtttatgttattacaa |
410 |
Q |
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| T |
17227979 |
ttaatttttaataccatgtttggaagcttcatcctcacgtcaccaatgcttattatctatctcttagaagctttgctttttcgtgtttatgttattacaa |
17227880 |
T |
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| Q |
411 |
aacttttattgattgattgt |
430 |
Q |
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| T |
17227879 |
aatttttattgatcgattgt |
17227860 |
T |
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Target: scaffold0022 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 318
Target Start/End: Original strand, 60657 - 60743
Alignment:
| Q |
232 |
aaggatgaaaatatgcaaactttaagcaagaacattaaacttccaatttatggatggttgaaatcaaaatacactacttttaatttt |
318 |
Q |
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||||| || |||||||||||||||| |||| || || |||| ||||||| | ||||||||||||||||| |||||||||||||| |
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| T |
60657 |
aaggaagagaatatgcaaactttaattgagaagatcaagcttcaaatttattggtggttgaaatcaaaataagctacttttaatttt |
60743 |
T |
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