View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19331_high_6 (Length: 243)
Name: NF19331_high_6
Description: NF19331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19331_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 45341218 - 45341448
Alignment:
| Q |
1 |
atttcccattgatgtacccccaaggtctatcattctcctcttacaatataattgtatccctccacaatcaggctctactatgttgtcattgttgggattt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45341218 |
atttcccattgatgtacccccaaggtctatcattctcctcttacaatataattgtatccctccacaatcaggctctactat-----cattgttgggattt |
45341312 |
T |
|
| Q |
101 |
attttaatgttactatttatttgggttcagttaataagttcctaatctgtaggttccaccaagtagaattgcatttgttttctttgtaaccgttaacacg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45341313 |
attttaatgttactatttatttgggttcagttaataagttcctaatctgtaggttccaccaagtagaattgcatttgttttctttgtaaccgttaacacg |
45341412 |
T |
|
| Q |
201 |
tttttaatacgtgagttgaacttttccttcttctca |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
45341413 |
tttttaatacgtgagttgaacttttccttcttctca |
45341448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 88 - 232
Target Start/End: Original strand, 45345652 - 45345797
Alignment:
| Q |
88 |
attgttgggatttattttaatgttactatttatttgggttcagttaataagttcctaatctgtaggttccaccaagtagaattgcatttg-ttttctttg |
186 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||| |||| |||| |
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|
| T |
45345652 |
attgttaggatttattttaatgttactatttatttgggttcagttaataagttcctagtttctaggttccaccaagtagaattgcatttgtttttttttg |
45345751 |
T |
|
| Q |
187 |
taaccgttaacacgtttttaatacgtgagttgaacttttccttctt |
232 |
Q |
| |
|
||||| | ||||| ||||||||| |||||||||||||||||||||| |
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|
| T |
45345752 |
taaccatcaacacatttttaataagtgagttgaacttttccttctt |
45345797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 89 - 226
Target Start/End: Complemental strand, 28302770 - 28302633
Alignment:
| Q |
89 |
ttgttgggatttattttaatgttactatttatttgggttcagttaataagttcctaatctgtaggttccaccaagtagaattgcatttgttttctttgta |
188 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || | | ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28302770 |
ttgttcggatttattttaatgttactatttatttgggttcagttaataagttcttagtttctaggttccaccaagtagaattgcatttgttttctttgta |
28302671 |
T |
|
| Q |
189 |
accgttaacacgtttttaatacgtgagttgaacttttc |
226 |
Q |
| |
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|| |||| |||||||||||||||||||||||||||||| |
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|
| T |
28302670 |
actgttaccacgtttttaatacgtgagttgaacttttc |
28302633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 33543397 - 33543497
Alignment:
| Q |
88 |
attgttgggatttattttaatgttactatttatttgggttcagttaataagttcctaatctgtaggttccaccaagtagaattgcatttgttttctttgt |
187 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| | | |||||||||| ||||||||| ||||||||||||||| |
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|
| T |
33543397 |
attgttgggatttattttaatgttgctatttatttgggttgagttaataagttcctagtttctaggttccactaagtagaataaaatttgttttctttgt |
33543496 |
T |
|
| Q |
188 |
a |
188 |
Q |
| |
|
| |
|
|
| T |
33543497 |
a |
33543497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 88 - 188
Target Start/End: Complemental strand, 33361628 - 33361528
Alignment:
| Q |
88 |
attgttgggatttattttaatgttactatttatttgggttcagttaataagttcctaatctgtaggttccaccaagtagaattgcatttgttttctttgt |
187 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||| | | |||||||||| ||||||||| ||||||||||||||| |
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|
| T |
33361628 |
attgttggaatttattttaatgttgctatttatttgggttgagttaataagttcctagtttctaggttccactaagtagaataaaatttgttttctttgt |
33361529 |
T |
|
| Q |
188 |
a |
188 |
Q |
| |
|
| |
|
|
| T |
33361528 |
a |
33361528 |
T |
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