View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19331_low_4 (Length: 366)
Name: NF19331_low_4
Description: NF19331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19331_low_4 |
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| [»] scaffold0197 (1 HSPs) |
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Alignment Details
Target: scaffold0197 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 6626 - 6276
Alignment:
| Q |
1 |
atgacagaaaaatacagatgggataggtttggctatgaataggaaataataatagcttctaatgtatgatgaggacaaatttctttgagaagatgaggac |
100 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| | ||||||||||||| ||||||||| |
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| T |
6626 |
atgacagaaacatacagatgggataggtttggctttgaataggaaataatacaagcttctaatgtatgatgagatccaatttctttgagatgatgaggac |
6527 |
T |
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| Q |
101 |
cacaattggattcttatgttgtatatttaaaaacatggagcttggaatcagagttttagaaagagcaatggaccatttactatgaattttgaagcatacg |
200 |
Q |
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||| ||||||| |||||| ||| ||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6526 |
caccattggatacttatgatgtctatttaaaaacatagagcttggtatctgagttttagaaagagcaatggaccatttactatgaattttgaagcatacg |
6427 |
T |
|
| Q |
201 |
acatagtatattactctgccttgctggctagtttggcacatcttacttcaagaaacannnnnnnnnnnnnnnnnnnnnnnnnttatcaccaccacacata |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6426 |
acatagtatattactctgccttgctggctagtttggcacatcttacttcaagaaacatgtgtgtgtgtaggtgtgtatgtgtttatcaccaccacacata |
6327 |
T |
|
| Q |
301 |
tatataaaagatgcaggtgtgggtcgaatatgagggtgaaaaagtagtagt |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6326 |
tatataaaagatgcaggtgtgggtcgaatatgagggtgaaaaagtagtagt |
6276 |
T |
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